View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_80 (Length: 235)
Name: NF18580_high_80
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_80 |
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| [»] scaffold0716 (1 HSPs) |
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Alignment Details
Target: scaffold0716 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 6440 - 6640
Alignment:
| Q |
23 |
atgttttgtagtgttgtttctctcagaggttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaata |
122 |
Q |
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| T |
6440 |
atgttttgtagtggtgtttctctcagaggttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaatgaatt |
6539 |
T |
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| Q |
123 |
gagtactaacttaattgttaatgagttgtgaagttgtgattgatttatcaaggatgtaattgaattacacttcattaaagacaagaacttttgtttatat |
222 |
Q |
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| T |
6540 |
gagtactaacttaattgttaatgagttgtgaagttgtgattgatttatcaaggatgtaattgaattacactttattaaagacaagaacttttgtttgtat |
6639 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
6640 |
t |
6640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 36161883 - 36161780
Alignment:
| Q |
23 |
atgttttgtagtgttgtttctctcagaggttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaata |
122 |
Q |
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| T |
36161883 |
atgttttgcagtggtctttctctcagaggttttctgagaccaaattgcagcaacaaggtgttggtttctcacatattttgtatgcttggaagaatgaata |
36161784 |
T |
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| Q |
123 |
gagt |
126 |
Q |
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|||| |
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| T |
36161783 |
gagt |
36161780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 29172431 - 29172509
Alignment:
| Q |
123 |
gagtactaacttaattgttaatgagttgtgaagttgtgattgatttatcaaggatgtaattgaattacacttcattaaa |
201 |
Q |
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| T |
29172431 |
gagtactaacataattgttaatgagttatgaagttgtgattgatttatcaaggttgcgattgaattacactttattaaa |
29172509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 29172337 - 29172411
Alignment:
| Q |
52 |
ttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaatagagt |
126 |
Q |
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|||||| |||| |||||| ||||||||||||| ||||||| |||||||||||| | |||||||||| |||||||| |
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| T |
29172337 |
tttttttagaccaaattgtagcaacaaggtgttggtttcttacatgttttgtatgtttggaagaatgaatagagt |
29172411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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