View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_82 (Length: 226)
Name: NF18580_high_82
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_82 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 19137879 - 19137666
Alignment:
| Q |
7 |
tttggcagttatgattttacggcaagatgaatttcagagtgtatatgtacaaacttattgagtgaattctatgatataattagggttgaaagcacttttg |
106 |
Q |
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| T |
19137879 |
tttggcagttatgattttacggcaagataaatttcagagtgtatatgtacgaacttattgagtgaattctatgatataattagggttgaaagcacttttg |
19137780 |
T |
|
| Q |
107 |
ctcctagtaatatgaggtagctcttttagtgagttaagagacgtt----nnnnnnnnnntttgaaagatgagggtatgtttgatccttataaaataacaa |
202 |
Q |
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| T |
19137779 |
ctcctagtaatatgaggtagctcttttagtgagttaagagacgttaaaaaaaaaaaaaaattgaaagatgagggtatgtttgatccttataaaataacaa |
19137680 |
T |
|
| Q |
203 |
atgttcatttctta |
216 |
Q |
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|||||||||||||| |
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| T |
19137679 |
atgttcatttctta |
19137666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 20737278 - 20737065
Alignment:
| Q |
7 |
tttggcagttatgattttacggcaagatgaatttcagagtgtatatgtacaaacttattgagtgaattctatgatataattagggttgaaagcacttttg |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20737278 |
tttggcagttatgattttacggcaagataaatttcagagtgtatatgtacgaacttattgagtgaattctatgatataattagggttgaaagcacttttg |
20737179 |
T |
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| Q |
107 |
ctcctagtaatatgaggtagctcttttagtgagttaagagacgtt----nnnnnnnnnntttgaaagatgagggtatgtttgatccttataaaataacaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20737178 |
ctcctagtaatatgaggtagctcttttagtgagttaagagacgttaaaaaaaaaaaaaaattgaaagatgagggtatgtttgatccttataaaataacaa |
20737079 |
T |
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| Q |
203 |
atgttcatttctta |
216 |
Q |
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|||||||||||||| |
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| T |
20737078 |
atgttcatttctta |
20737065 |
T |
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