View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_12 (Length: 441)

Name: NF18580_low_12
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_12
NF18580_low_12
[»] chr2 (3 HSPs)
chr2 (7-182)||(12145145-12145322)
chr2 (242-334)||(12145383-12145475)
chr2 (393-423)||(12145532-12145562)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 12145145 - 12145322
Alignment:
Q  7 tcgaagaatattgattccctttgttattagacatgaatatgttaaatattattagaaagtagaaacataa--aatctttgacaaaacaaaattgaagaaa 104  Q
    ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  12145145 tcgaataaaattgattccctttgttattagacatgaatatgttaagtattattagaaagtagaaacatcatcaatctttgacaaaacaaaattgaagaaa 12145244  T
Q  105 gacaacctttgcatgcattcttgatagtttcagcgtcttcaattggagaaaaatcttttacagcaagtagagaagcca 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12145245 gacaacctttgcatgcattcttgatagtttcagcgtcttcaattggagaaaaatcttttacagcaagtagagaagcca 12145322  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 12145383 - 12145475
Alignment:
Q  242 atagaagagaaacataaaataactgtttttcagtaatgaaatactaccctnnnnnnncttccagccctaaaatattcctaataactaaatacg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  12145383 atagaagagaaacataaaataactgtttttcagtaatgaaatactaccctaaaaaaacttccagccctaaaatattcctaataactaaatacg 12145475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 423
Target Start/End: Original strand, 12145532 - 12145562
Alignment:
Q  393 agggaacttactacgttatttgaaaagttcc 423  Q
    |||||||||||||||||||||||||||||||    
T  12145532 agggaacttactacgttatttgaaaagttcc 12145562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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