View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_13 (Length: 421)

Name: NF18580_low_13
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_13
NF18580_low_13
[»] chr4 (6 HSPs)
chr4 (11-373)||(6136102-6136464)
chr4 (135-263)||(2946929-2947057)
chr4 (11-130)||(2946660-2946779)
chr4 (23-130)||(17405129-17405236)
chr4 (277-360)||(2947040-2947122)
chr4 (235-286)||(17404972-17405022)
[»] chr6 (3 HSPs)
chr6 (11-321)||(27991319-27991620)
chr6 (135-314)||(20726085-20726264)
chr6 (23-77)||(13627842-13627896)
[»] chr8 (10 HSPs)
chr8 (135-360)||(15151756-15151980)
chr8 (135-321)||(19442628-19442813)
chr8 (135-321)||(19578779-19578964)
chr8 (193-334)||(19436987-19437128)
chr8 (193-334)||(19573136-19573277)
chr8 (23-124)||(19442403-19442504)
chr8 (23-124)||(19578554-19578655)
chr8 (23-130)||(15151320-15151427)
chr8 (23-96)||(16822010-16822083)
chr8 (34-86)||(16054807-16054859)
[»] chr1 (7 HSPs)
chr1 (140-334)||(27908580-27908774)
chr1 (135-334)||(28538766-28538966)
chr1 (135-314)||(2900675-2900853)
chr1 (11-130)||(28538506-28538625)
chr1 (11-114)||(27908301-27908404)
chr1 (18-96)||(23971056-23971134)
chr1 (11-114)||(2900411-2900511)
[»] chr3 (3 HSPs)
chr3 (135-314)||(9021455-9021634)
chr3 (20-130)||(9021761-9021871)
chr3 (34-90)||(25226627-25226683)
[»] chr2 (16 HSPs)
chr2 (135-321)||(24578895-24579079)
chr2 (13-130)||(17628324-17628441)
chr2 (11-130)||(17673395-17673514)
chr2 (18-126)||(1644617-1644725)
chr2 (135-314)||(37080958-37081135)
chr2 (171-314)||(3564445-3564589)
chr2 (235-334)||(19569808-19569906)
chr2 (11-127)||(19569582-19569698)
chr2 (18-130)||(37081308-37081420)
chr2 (135-262)||(1644879-1645010)
chr2 (29-114)||(3563566-3563651)
chr2 (266-361)||(1645302-1645396)
chr2 (135-198)||(17628113-17628176)
chr2 (135-198)||(17673183-17673246)
chr2 (66-127)||(24578681-24578742)
chr2 (135-166)||(3563811-3563842)
[»] chr5 (8 HSPs)
chr5 (11-125)||(15023557-15023671)
chr5 (135-334)||(21714587-21714778)
chr5 (135-334)||(21788502-21788693)
chr5 (11-108)||(21788233-21788330)
chr5 (11-130)||(21714319-21714438)
chr5 (11-130)||(13502425-13502544)
chr5 (199-321)||(13502109-13502227)
chr5 (34-86)||(16988342-16988394)
[»] chr7 (5 HSPs)
chr7 (144-320)||(22763782-22763959)
chr7 (135-295)||(4633418-4633578)
chr7 (18-101)||(4633993-4634076)
chr7 (23-95)||(32238915-32238987)
chr7 (34-113)||(22384190-22384269)
[»] scaffold0010 (1 HSPs)
scaffold0010 (34-90)||(235746-235802)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 6136102 - 6136464
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6136102 atgaatggaaagactattaaacatttcatttgatattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagctaggatcc 6136201  T
Q  111 atgtgccagagtctaggcttatgcaattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6136202 atgtgccagagtctaggcttatgcaattgtttggcaattgcaattggcacctactcatatcttatgaagttatgatcaatgatatatgacacttgtgctt 6136301  T
Q  211 ttggcaattgattttacttgtgttaatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataag 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||| ||||||||||||||    
T  6136302 ttggcaattgattttatttgtgttaatagttgcataattgagatgaagagatggtttttgtttacaaattgagatggagaaattattcatagagaataag 6136401  T
Q  311 aattcgaaagacatgagactcatatacggaggttaaatattgtgactttttataggtaaaagc 373  Q
    |||| |||||| | |||||||||| ||  |||| ||||||||| |||||| ||| | ||||||    
T  6136402 aattagaaagaaaggagactcataaactaaggtaaaatattgtaacttttaatatgcaaaagc 6136464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 2946929 - 2947057
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||||||||||||||||||||| ||||||||  || ||| ||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||||    
T  2946929 aattgtttggcaattgcaattgacacctacttctatcttgtgaagttatgatcaatggtatatgacacttatgcttttggcaattgattgttcttgtgtt 2947028  T
Q  235 aatagttgcataattgagatggagagatt 263  Q
    ||||||| |||||||||||||||||||||    
T  2947029 aatagtttcataattgagatggagagatt 2947057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 2946660 - 2946779
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || ||||     
T  2946660 atgaatggaaagactatttaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgcgagccaattagctctaaactatgatct 2946759  T
Q  111 atgtgccagagtctaggctt 130  Q
    |||| | |||||||||||||    
T  2946760 atgttctagagtctaggctt 2946779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 17405236 - 17405129
Alignment:
Q  23 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||| |||||||||||||| |||||||||||| ||| | |    
T  17405236 actattaaacatttcatttgacattgtgcaagaagaacacaagtatgaattttttaagtgtgaaccaattagctctaaggtaggatccatgttccaaaat 17405137  T
Q  123 ctaggctt 130  Q
    ||||||||    
T  17405136 ctaggctt 17405129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 360
Target Start/End: Original strand, 2947040 - 2947122
Alignment:
Q  277 aattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcatatacggaggttaaatattgtgactttt 360  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |||||||| | ||  |||| ||||||||||||||||    
T  2947040 aattgagatggagagattagtcatagagaataagaattagaaagaaaagagactcaaaaac-aaggtaaaatattgtgactttt 2947122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 17405022 - 17404972
Alignment:
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatg 286  Q
    |||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  17405022 aataattgcataattgagatggagaga-tgtttttgtttacaaattgagatg 17404972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 27991620 - 27991319
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| ||||||||||||||||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||  ||| ||      
T  27991620 atgaatggaaagactattaaacatttcattttacattatgcaaaaagaacacaagtatgaatcattgaaatgtgaatcaattagctctaaactagaattt 27991521  T
Q  111 atgtgccagagtctaggcttatgcaattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgctt 210  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    | ||||||| |||||    
T  27991520 atgttccagagtataggcttatgcaattgtttggcaattgcaattggcacctactcatatcttatg-agttatgatcaatg--gcacgacacttatgctt 27991424  T
Q  211 ttggcaattgattttacttgtgttaatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataag 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||||   |||||||||||||||      ||||||||| |||||||||||||     
T  27991423 ttggcaattgattttatttgtgttaatagttgcataattgagatgaaaagatgttttttgtttacaaatt------gagagattattcatagagaataat 27991330  T
Q  311 aattcgaaaga 321  Q
    |||| ||||||    
T  27991329 aattagaaaga 27991319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 135 - 314
Target Start/End: Complemental strand, 20726264 - 20726085
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||| ||||| ||||||||||||||| || || || ||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| | ||||||||    
T  20726264 aattatttggtaattgcaattggcacatattcctatcttatgaagttatgatcaatgttatacgacacttatgcttttgacaattgattgttcttgtgtt 20726165  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaatt 314  Q
    ||||||| ||||||||||||||||| ||   |||||||||||||||||||| ||||| ||||||| | | ||||||||||    
T  20726164 aatagtttcataattgagatggagatatgttttttgtttacaaattgagatagagaggttagtcacatacaataagaatt 20726085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 13627842 - 13627896
Alignment:
Q  23 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttg 77  Q
    |||||||||||||| |||||||||| |||||||| ||||||  ||||||||||||    
T  13627842 actattaaacattttatttgacattatgcaagaaaaacacaaatatgaatctttg 13627896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 135 - 360
Target Start/End: Original strand, 15151756 - 15151980
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    ||||||||| ||||||||||||||||||||||  | |||||||||||||||| |||| |||| ||||||| ||||||||||||||| ||   ||||||||    
T  15151756 aattgtttgacaattgcaattggcacctactccaatcttatgaagttatgatgaatggtatacgacacttatgcttttggcaattggttgctcttgtgtt 15151855  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcata 334  Q
    |||||||||| ||||| |||||||||||   ||||||||||||||||||||||||||||||| || ||||||| ||||||  ||||| | ||||||||||    
T  15151856 aatagttgcagaattgtgatggagagatgatttttgtttacaaattgagatggagagattagacaaagagaatgagaattataaagaaacgagactcata 15151955  T
Q  335 tacggaggttaaatattgtgactttt 360  Q
     ||  |||| ||||||||||||||||    
T  15151956 aac-taggtaaaatattgtgactttt 15151980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 19442628 - 19442813
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||||||||| ||||||||||||||||||||| ||  |||||| ||||||||||||| |||| | ||||| |||| ||||||||||||  | ||||||||    
T  19442628 aattgtttggaaattgcaattggcacctactcctatattatga-gttatgatcaatggtataaggcacttatgctcttggcaattgatcgttcttgtgtt 19442726  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaaga 321  Q
    ||||||||||||||||||||||||||||   |||||||||||| |||||||||| |||||||||||||| |||||||||| ||||||    
T  19442727 aatagttgcataattgagatggagagatgttttttgtttacaatttgagatggatagattagtcatagaaaataagaattagaaaga 19442813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 19578779 - 19578964
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||||||||| ||||||||||||||||||||| ||  |||||| ||||||||||||| |||| | ||||| |||| ||||||||||||  | ||||||||    
T  19578779 aattgtttggaaattgcaattggcacctactcctatattatga-gttatgatcaatggtataaggcacttatgctcttggcaattgatcgttcttgtgtt 19578877  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaaga 321  Q
    ||||||||||||||||||||||||||||   |||||||||||| |||||||||| |||||||||||||| |||||||||| ||||||    
T  19578878 aatagttgcataattgagatggagagatgttttttgtttacaatttgagatggatagattagtcatagaaaataagaattagaaaga 19578964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 19436987 - 19437128
Alignment:
Q  193 tatatgacacttgtgcttttggcaattgattttacttgtgttaatagttgcataattgagatggagagattggttttgtttacaaattgagatggagaga 292  Q
    |||| ||||||| ||||| || |||||| || | ||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||| |||||     
T  19436987 tatacgacacttatgcttatgacaattgtttgttcttgtgttaatagttgcataattgagatggagagatgttttttctttacaaattgagatagagagg 19437086  T
Q  293 ttagtcatagagaataagaattcgaaagacatgagactcata 334  Q
    |||||||||||||||||||||| |||||| | || |||||||    
T  19437087 ttagtcatagagaataagaattagaaagaaaagaaactcata 19437128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 19573136 - 19573277
Alignment:
Q  193 tatatgacacttgtgcttttggcaattgattttacttgtgttaatagttgcataattgagatggagagattggttttgtttacaaattgagatggagaga 292  Q
    |||| ||||||| ||||| || |||||| || | ||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||| |||||     
T  19573136 tatacgacacttatgcttatgacaattgtttgttcttgtgttaatagttgcataattgagatggagagatgttttttctttacaaattgagatagagagg 19573235  T
Q  293 ttagtcatagagaataagaattcgaaagacatgagactcata 334  Q
    |||||||||||||||||||||| |||||| | || |||||||    
T  19573236 ttagtcatagagaataagaattagaaagaaaagaaactcata 19573277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 19442403 - 19442504
Alignment:
Q  23 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 122  Q
    ||||||||||||||||||||| ||||||| | | ||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||    
T  19442403 actattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtgaaacaaatagctctaagttagaatccatgttccagagt 19442502  T
Q  123 ct 124  Q
    ||    
T  19442503 ct 19442504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 19578554 - 19578655
Alignment:
Q  23 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 122  Q
    ||||||||||||||||||||| ||||||| | | ||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||    
T  19578554 actattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtgaaacaaatagctctaagttagaatccatgttccagagt 19578653  T
Q  123 ct 124  Q
    ||    
T  19578654 ct 19578655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 15151320 - 15151427
Alignment:
Q  23 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 122  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||| |||||||  |||| |||||||| |||||||||| | ||||| |    
T  15151320 actattaaacatttcatttgacattatgcaagaagaacacaagtataaatcattgatatgtgaacgaattggctctaagctaggatccatattccagaat 15151419  T
Q  123 ctaggctt 130  Q
    ||| ||||    
T  15151420 ctatgctt 15151427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 16822010 - 16822083
Alignment:
Q  23 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagct 96  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||| |||||| |||||||||    
T  16822010 actattaaacatttcatttgacattgtacaagaaaaacacaagtatgaatcattgaagtgtgaaccaattagct 16822083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 16054859 - 16054807
Alignment:
Q  34 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaa 86  Q
    |||||||||| ||||||||| ||||||||  ||||| ||||||||||||||||    
T  16054859 tttcatttgagattgtgcaaaaagaacacgagtatggatctttgaaatgtgaa 16054807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 140 - 334
Target Start/End: Original strand, 27908580 - 27908774
Alignment:
Q  140 tttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgttaatag 239  Q
    ||||||||||||| ||||||| ||||  ||  ||||||||||||| |||||| |||| ||||||| |||||||||||||| ||| | |||||||||||||    
T  27908580 tttggcaattgcagttggcacatacttctattttatgaagttatggtcaatggtatacgacacttatgcttttggcaattaattgttcttgtgttaatag 27908679  T
Q  240 ttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcata 334  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||| | |||||||| ||||||||||||| |||||| |  |||||||||    
T  27908680 ttgcataattgagatggagagatattttttgtttacaaattgagatggagtggttagtcattgagaataagaattagaaagaaaatagactcata 27908774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 334
Target Start/End: Original strand, 28538766 - 28538966
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatga-tatatgacacttgtgcttttggcaattgattttacttgtgt 233  Q
    ||||||||||||||||||||| |||||| ||| ||  ||||||||||||||||||||  |||||||||||| |||||| || |||||||| | | |||||    
T  28538766 aattgtttggcaattgcaattagcaccttctcctattttatgaagttatgatcaatgggtatatgacacttatgctttcggtaattgattattcctgtgt 28538865  T
Q  234 taatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcat 333  Q
    |||||||||||||||||||||| ||||||   ||||||||||||||  ||||||||| ||||||  ||| |||||||||||| ||||| |||||||||||    
T  28538866 taatagttgcataattgagatgaagagatgttttttgtttacaaatcaagatggagaaattagttgtagcgaataagaattcaaaagaaatgagactcat 28538965  T
Q  334 a 334  Q
    |    
T  28538966 a 28538966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 135 - 314
Target Start/End: Original strand, 2900675 - 2900853
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||||||||||| ||||| ||| ||| ||||| || ||||||||||||||||||||| |||| |||| || ||||||||| |||||||| | || |||||    
T  2900675 aattgtttggca-ttgcagttgacacgtactcttatcttatgaagttatgatcaatggtatacgacatttatgcttttggaaattgattgttctcgtgtt 2900773  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaatt 314  Q
    ||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  2900774 aatagttgcataattgagatgaagagatgttttttgtttacaaattgagttggagaggttagtcatagagaataagaatt 2900853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 28538506 - 28538625
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| | ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||    
T  28538506 atgaatggaaagattatgaaacatttcatttgacattgtgctagaagaacacaagtatgaatctttgaaatgtgaaccaattaactctaagctaggatcc 28538605  T
Q  111 atgtgccagagtctaggctt 130  Q
    |||| |  ||||||||||||    
T  28538606 atgttcaggagtctaggctt 28538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 27908301 - 27908404
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| | || |||| ||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||    
T  27908301 atgaatggaaagattaataaatatttcatttcacattgtgcaacaagaacacaagtatgaatatttgaaatgtgaaccaattagctctaagctaggatcc 27908400  T
Q  111 atgt 114  Q
    ||||    
T  27908401 atgt 27908404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 23971134 - 23971056
Alignment:
Q  18 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagct 96  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  23971134 gaaagactattaaacatttcatttgacattgtgcaagaaaaacacaagtatgaatctttgaagtgtgaaccaattagct 23971056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 2900411 - 2900511
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| |||||||||||||||||||||||||||||   ||||||||| |||| |||||||||||||  || |||||||||||||| ||||||||    
T  2900411 atgaatggaaagactattaaacatttcatttgacattgtgc---aagaacacaagtataaatctttgaaatgacaaccaattagctctaagctaggatcc 2900507  T
Q  111 atgt 114  Q
    ||||    
T  2900508 atgt 2900511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 135 - 314
Target Start/End: Complemental strand, 9021634 - 9021455
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||  |||||||  ||||   ||||| |||||||| ||||||||| | |||||| |    
T  9021634 aattgtttggcaattgcaattggcgcctactcctatcttatgaagttgcgatcaatcgtatacatcacttatgcttttgacaattgattgttcttgtgct 9021535  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaatt 314  Q
    ||||||||| ||||| ||||||||||||   |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  9021534 aatagttgcgtaattaagatggagagatattttttgttttcaaattgagatggagatattagtcatagagaataagaatt 9021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 9021871 - 9021761
Alignment:
Q  20 aaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||  |||||||| ||||    
T  9021871 aaaactattaaacatttcatttgacattgtgcaagaagaacacaagtatgaatctttgaaatgtaaaccaattagctctaagctataatccatgttccag 9021772  T
Q  120 agtctaggctt 130  Q
    |||||||||||    
T  9021771 agtctaggctt 9021761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 25226627 - 25226683
Alignment:
Q  34 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaa 90  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  25226627 tttcatttgacattgtgcaaaaagaacacgagtatgaatctttgaaatgtgaatcaa 25226683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 24578895 - 24579079
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||||||||||||||||||  ||||||||||| || ||||||| ||||||||||||| |||| |  |||| |||| ||||||||||||  | ||||| |     
T  24578895 aattgtttggcaattgcaacgggcacctactcctatcttatga-gttatgatcaatggtataaggtacttatgctcttggcaattgatcgttcttgtat- 24578992  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaaga 321  Q
    ||||||||||||||||||||||||||||   |||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||    
T  24578993 aatagttgcataattgagatggagagatgttttttgtttacaatttgagatggatagattagccatagagaataagaattagaaaga 24579079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 17628441 - 17628324
Alignment:
Q  13 gaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccat 112  Q
    |||| |||| ||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||    
T  17628441 gaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgtgaatcaattagctctaagctaggatccat 17628342  T
Q  113 gtgccagagtctaggctt 130  Q
    || | |||||||| ||||    
T  17628341 gttcaagagtctatgctt 17628324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 17673514 - 17673395
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| ||||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||    
T  17673514 atgaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgtgaaccaattagctctaagctaggatcc 17673415  T
Q  111 atgtgccagagtctaggctt 130  Q
    |||| | |||||||| ||||    
T  17673414 atgttcaagagtctatgctt 17673395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 1644617 - 1644725
Alignment:
Q  18 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgcc 117  Q
    |||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||  ||||||||||||| ||||||||||||  |    
T  1644617 gaaagactattaaacatttcatttgacattgtgcaagaagagcataggtatgaatctttgaaatgtgaacaaattagctctaagctaggatccatgtttc 1644716  T
Q  118 agagtctag 126  Q
    |||||||||    
T  1644717 agagtctag 1644725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 314
Target Start/End: Complemental strand, 37081135 - 37080958
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    ||||||||| ||||||||||||||||||| |||||  | |||||||| |||||||||||||  | ||||| ||||||| |||||||  |||  |  ||||    
T  37081135 aattgtttgccaattgcaattggcacctagtcatatttaatgaagttgtgatcaatgatatgcggcacttatgcttttagcaattg--tttgttcatgtt 37081038  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaatt 314  Q
    || ||||||||||||| |||||||| ||   ||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  37081037 aacagttgcataattgtgatggagaaatattttttgtttacaaattgagatggagagattaaacatagagaatgagaatt 37080958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 3564445 - 3564589
Alignment:
Q  171 cttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgttaatagttgcataattgagatggag-agattggtttt 269  Q
    ||||||||||||||||||||| ||||  |||||| || ||||||||||||||| | |||||||||||| ||   ||||| |||||||| ||||   ||||    
T  3564445 cttatgaagttatgatcaatggtatacaacacttatgtttttggcaattgattgttcttgtgttaataattatgtaattaagatggagaagatgcttttt 3564544  T
Q  270 gtttacaaattgagatggagagattagtcatagagaataagaatt 314  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  3564545 gtttacaaattgagatgaagaaattagtcgtagagaataagaatt 3564589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 19569808 - 19569906
Alignment:
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcata 334  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | ||||||||||    
T  19569808 aatagttgcataattgagatgaagagat-gtttttgtttacaaattgagatagagaggttagtcatagagaataagaattagaaagaaaagagactcata 19569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 19569582 - 19569698
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||| |||||| | || ||||||||| ||||||||    
T  19569582 atgaatggaaagactattaaacatttcatttgacattgtgcaagaaaaacacaaatatgaatttttgaattgtgaaccgatgagctctaagctaggatcc 19569681  T
Q  111 atgtgccagagtctagg 127  Q
    |||| | | ||||||||    
T  19569682 atgttcgaaagtctagg 19569698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 37081420 - 37081308
Alignment:
Q  18 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgcc 117  Q
    |||| ||||| |||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||  ||||||  ||    
T  37081420 gaaagactatcaaacattttattttatattgtgcaagaagaacacaagtatgaatctttgaaatgtgaaccgattagctctaagttagagtccatgatcc 37081321  T
Q  118 agagtctaggctt 130  Q
     ||||||||||||    
T  37081320 ggagtctaggctt 37081308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 1644879 - 1645010
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattt----tacttg 230  Q
    ||||||||| |||||||||||| ||| ||||| || ||||||||| ||| ||||||| |||| ||||| | |||| ||||||||| |||     | ||||    
T  1644879 aattgtttgacaattgcaattgacacatactcctatcttatgaagatataatcaatggtatacgacacctatgctcttggcaattaattgatcgttcttg 1644978  T
Q  231 tgttaatagttgcataattgagatggagagat 262  Q
    ||||||||||||||||||||||||||||||||    
T  1644979 tgttaatagttgcataattgagatggagagat 1645010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 3563566 - 3563651
Alignment:
Q  29 aaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgt 114  Q
    |||||||||||| |||||| | |||||||| |||| ||||||||||||||||| | || |||||||||||||| ||||||||||||    
T  3563566 aaacatttcattcgacattttacaagaagagcacaagtatgaatctttgaaatataaaccaattagctctaagctaggatccatgt 3563651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 1645302 - 1645396
Alignment:
Q  266 ttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcatatacggaggttaaatattgtgacttttt 361  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||||| |||||| | |||||||| | ||  |||| |||||||||||||||||    
T  1645302 ttttctttataaattgagatggagagattagtcatagaaaataagaattagaaagaaaagagactcacaaac-taggtaaaatattgtgacttttt 1645396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 17628176 - 17628113
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatg 198  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||    
T  17628176 aattgtttggcaattgcaattggcacatactcctatcttatgaagttatgatcaatggtatatg 17628113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 17673246 - 17673183
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatg 198  Q
    ||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||| ||||||    
T  17673246 aattgtttgccaattgcaattggcacatactcctatcttatgaagttatgatcaatggtatatg 17673183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 24578681 - 24578742
Alignment:
Q  66 tatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagtctagg 127  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||||||||||    
T  24578681 tatgaatctttgaaatgtgaaataattagctctaagctagaatccatgttccagagtctagg 24578742  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 3563811 - 3563842
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactc 166  Q
    ||||||||||||||||||||||||||||||||    
T  3563811 aattgtttggcaattgcaattggcacctactc 3563842  T

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Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 15023671 - 15023557
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||  ||||||||    
T  15023671 atgaatggaaagactattaaacatttcatttgacattgtacaaaaagaacacaagtatgaatttttgaaatgtgaatcaattagctctaaactaggatcc 15023572  T
Q  111 atgtgccagagtcta 125  Q
    |||||||| ||||||    
T  15023571 atgtgccaaagtcta 15023557  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 135 - 334
Target Start/End: Original strand, 21714587 - 21714778
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||| ||||||||||||||||||||||||||  || |||||||||||||||||||  |       ||||| ||||||||  |||||||| | ||| ||||    
T  21714587 aattctttggcaattgcaattggcacctacttctatcttatgaagttatgatcaacta-------cacttatgcttttgaaaattgattgttcttttgtt 21714679  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcata 334  Q
    ||||||||||||| |||||  |||||||   ||||||| |||||||||||||||| | |||||||||||||||||||||| |||||| || |||||||||    
T  21714680 aatagttgcataactgagacagagagatattttttgttaacaaattgagatggagtggttagtcatagagaataagaattagaaagaaat-agactcata 21714778  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 135 - 334
Target Start/End: Original strand, 21788502 - 21788693
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||| ||||||||||||||||||||||||||  || |||||||||||||||||||  |       ||||| ||||||||  |||||||| | ||| ||||    
T  21788502 aattctttggcaattgcaattggcacctacttctatcttatgaagttatgatcaacta-------cacttatgcttttgaaaattgattgttcttttgtt 21788594  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaagacatgagactcata 334  Q
    ||||||||||||| |||||  |||||||   ||||||| |||||||||||||||| | |||||||||||||||||||||| |||||| || |||||||||    
T  21788595 aatagttgcataactgagacagagagatattttttgttaacaaattgagatggagtggttagtcatagagaataagaattagaaagaaat-agactcata 21788693  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 21788233 - 21788330
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggat 108  Q
    |||||| |||||||||||||| ||||||||||| |||||||| |||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||    
T  21788233 atgaatcgaaaaactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaagttaggat 21788330  T

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Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 21714319 - 21714438
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| |||| ||||||||| ||||||||||| |||||||| |||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||      
T  21714319 atgaatcgaaagactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaagttaggatat 21714418  T
Q  111 atgtgccagagtctaggctt 130  Q
     ||| ||| |||||||||||    
T  21714419 gtgttccaaagtctaggctt 21714438  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 13502544 - 13502425
Alignment:
Q  11 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 110  Q
    |||||| ||||  |||||||| |||| ||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||      
T  13502544 atgaatcgaaaggctattaaatattttattcgatattgtgcaagaagaacacaagtatgaatatttgaaatgtgaatcaattagccctaagctaggatat 13502445  T
Q  111 atgtgccagagtctaggctt 130  Q
     ||| ||| |||||||||||    
T  13502444 gtgttccaaagtctaggctt 13502425  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 321
Target Start/End: Complemental strand, 13502227 - 13502109
Alignment:
Q  199 acacttgtgcttttggcaattgattttacttgtgttaatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagattagtc 298  Q
    |||||| |||||||| ||||||||| | ||| ||||||||||||||||| |||||  |||||||   ||||||| ||||||||||||||||    |||||    
T  13502227 acacttatgcttttgacaattgattgttcttttgttaatagttgcataactgagacagagagatattttttgttaacaaattgagatggag----tagtc 13502132  T
Q  299 atagagaataagaattcgaaaga 321  Q
    ||||||||||| |||| ||||||    
T  13502131 atagagaataaaaattagaaaga 13502109  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 16988342 - 16988394
Alignment:
Q  34 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaa 86  Q
    ||||||||||  |||||||| ||||||||  ||||| ||||||||||||||||    
T  16988342 tttcatttgatgttgtgcaaaaagaacacgagtatggatctttgaaatgtgaa 16988394  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 320
Target Start/End: Original strand, 22763782 - 22763959
Alignment:
Q  144 gcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttg-tgcttttggcaattgattttacttgtgttaatagttg 242  Q
    |||||||||||||  |||||||  || ||||||||||||||||||||| |||| |  ||||  |||||| |||||||| || | ||||||||||||||||    
T  22763782 gcaattgcaattgatacctactgctatcttatgaagttatgatcaatgttatacggtacttaatgctttaggcaattggttgttcttgtgttaatagttg 22763881  T
Q  243 cataattgagatggagagattggttttgtttacaaattgagatggagagattagtcatagagaataagaattcgaaag 320  Q
    || |||||||||| ||||||   |||||||||||| |||| ||||||||||||| ||||||| || |||||| |||||    
T  22763882 cagaattgagatgaagagatgttttttgtttacaagttgaaatggagagattagacatagaggatgagaattagaaag 22763959  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 295
Target Start/End: Complemental strand, 4633578 - 4633418
Alignment:
Q  135 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 234  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||  |||||| || |||||||| ||  || | ||||||||    
T  4633578 aattgtttggtaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatttatttgttcttgtgtt 4633479  T
Q  235 aatagttgcataattgagatggagagattggttttgtttacaaattgagatggagagatta 295  Q
    || ||| | | |||||||  ||||| ||   ||||||||| ||||||||||||||||||||    
T  4633478 aacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagatta 4633418  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 4634076 - 4633993
Alignment:
Q  18 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaag 101  Q
    |||| ||||||||||||||||| ||||||| |||||||| || |||  ||||||||||||||||||||| ||||| ||| ||||    
T  4634076 gaaagactattaaacatttcatatgacattatgcaagaaaaatacaaatatgaatctttgaaatgtgaaccaattggctataag 4633993  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 32238987 - 32238915
Alignment:
Q  23 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagc 95  Q
    ||||||||| ||||||||||||||||||||| || ||| || |||||||||||| || ||||||  |||||||    
T  32238987 actattaaatatttcatttgacattgtgcaacaaaaacgcaagtatgaatctttaaagtgtgaactaattagc 32238915  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 22384269 - 22384190
Alignment:
Q  34 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatg 113  Q
    ||||| |||||||||||||| |||||||   |||||| ||||| ||||||||||||| | | |||||  |||||||||||    
T  22384269 tttcagttgacattgtgcaaaaagaacatgagtatgagtctttaaaatgtgaatcaagtggttctaatataggatccatg 22384190  T

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Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 235802 - 235746
Alignment:
Q  34 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaa 90  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||||||||||    
T  235802 tttcatttgacattgtgcaaaaagaacatgagtatgaatctttgaaatgtgaatcaa 235746  T

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