View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_15 (Length: 417)
Name: NF18580_low_15
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 402
Target Start/End: Complemental strand, 1139604 - 1139217
Alignment:
| Q |
15 |
cttcggccataaaacactgagctatgataataaactgtttcattgaaggaaggactaggatgaacgtagatcgaatacaacccttcgtttcctttaaaga |
114 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139604 |
cttcggccataaaacactgagctttgattataaactgtttcattgaaggaaggactaggatgaacgtagatcgaatacaacccttcgtttcctttaaaga |
1139505 |
T |
|
| Q |
115 |
atttctcccaaagcggagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139504 |
atttctcccaaagcggagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagc |
1139405 |
T |
|
| Q |
215 |
caatgaagctctccaaaataattcatcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1139404 |
caatgaagctctccaaaataattcatcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccatttgaagtaaggttatgagta |
1139305 |
T |
|
| Q |
315 |
atagccgaacaattttgtttgatagaaatattggtttggttattttggtcatatgatgtttttgagatgttggataatagtattggag |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1139304 |
atagccgaacaattttgtttgatagaaatattggtttggttattttggtcatatgatgtttttgagatgttggatagtagtattggag |
1139217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 402
Target Start/End: Complemental strand, 1136393 - 1136009
Alignment:
| Q |
15 |
cttcggccataaaacactgagctatgataataaactgtttcattgaaggaaggactaggatgaacgtagatcgaatacaacccttcgtttcctttaaaga |
114 |
Q |
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|||||||||| ||||||| |||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1136393 |
cttcggccatgaaacactaagctttgattataaacggtttcattgaaggaagggctaggatgaacgtagatcgaatacaacccttcgtttcctttgaaga |
1136294 |
T |
|
| Q |
115 |
atttctcccaaagcggagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagc |
214 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136293 |
atttctcccaaagcggagctaacaaaacaggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagc |
1136194 |
T |
|
| Q |
215 |
caatgaagctctccaaaataattcatcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagta |
314 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
1136193 |
caatgaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaaccatttgaagtaaggttatgag-- |
1136096 |
T |
|
| Q |
315 |
atagccgaacaattttgtttgatagaaatattggtttggttattttggtcatatgatgtttttgagatgttggataatagtattggag |
402 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1136095 |
-tagccggacaattttgtttgatagaaatattggtttggttatcatggtcatatgatgtttttgagatgttggataataatattggag |
1136009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 26 - 357
Target Start/End: Original strand, 54479144 - 54479475
Alignment:
| Q |
26 |
aaacactgagctatgataataaactgtttcattgaaggaaggactaggatgaacgtagatcgaatacaacccttcgtttcctttaaagaatttctcccaa |
125 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||| |||||| ||||||| | |||||| ||||| |||||||| |||||||| ||||||||||||||| |
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| T |
54479144 |
aaacactgagctttgagtataaaccatttcattgaaagaaggattaggatgtatgtagatagaatataacccttcatttcctttgaagaatttctcccaa |
54479243 |
T |
|
| Q |
126 |
agcggagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctc |
225 |
Q |
| |
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|| ||||||||||||| ||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
54479244 |
agtggagccaacaaaacaggacctattgtcaagaacataaacgcaacctttggtgtttgtttgaatggagttttatgaatcataggttccaatgaagctc |
54479343 |
T |
|
| Q |
226 |
tccaaaataattcatcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaaca |
325 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||| || || |||| ||| |||| | |||||||||||| ||||| | || | || |
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|
| T |
54479344 |
tccaaaacaattcatcctcattcatgtcatgcatagccataggaatcttcaacaagtctttcaacccatgtgaagtaaggttattagtaacaaccaagca |
54479443 |
T |
|
| Q |
326 |
attttgtttgatagaaatattggtttggttat |
357 |
Q |
| |
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|| || ||||||||||||||| |||||||||| |
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| T |
54479444 |
atattttttgatagaaatatttgtttggttat |
54479475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 31269002 - 31269290
Alignment:
| Q |
15 |
cttcggccataaaacactgagctatgataataaactgtttcattgaaggaaggactaggatgaacgtagatcgaatacaacccttcgtttcctttaaaga |
114 |
Q |
| |
|
|||||||||| ||| |||||||| |||| |||||| ||||||||||| |||||| | ||||||| |||||| |||||||||||||| |||||||| |||| |
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|
| T |
31269002 |
cttcggccatgaaagactgagctttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttcatttcctttgaaga |
31269101 |
T |
|
| Q |
115 |
atttctcccaaagcggagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagc |
214 |
Q |
| |
|
|||||||||| | |||||||| |||| | | ||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||| |
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| T |
31269102 |
atttctcccacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaat |
31269201 |
T |
|
| Q |
215 |
caatgaagctctccaaaataattcatcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaa |
303 |
Q |
| |
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|| |||||||||||||||||||| || |||||||| |||||||||||| | |||||||| || ||||| ||||| |||||| |||||| |
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|
| T |
31269202 |
catcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaa |
31269290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 48324340 - 48324581
Alignment:
| Q |
15 |
cttcggccataaaacactgagctatgataataaactgtttcattgaaggaaggactaggatgaacgtagatcgaatacaacccttcgtttcctttaaaga |
114 |
Q |
| |
|
|||||||||| |||||| || || | || ||||| |||| |||||| || ||||| ||||||| |||||| ||||||| |||||| |||||||| |||| |
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| T |
48324340 |
cttcggccatgaaacacagatctttcattgtaaaccgtttgattgaaagatggacttggatgaatgtagattgaatacatcccttcatttcctttgaaga |
48324439 |
T |
|
| Q |
115 |
atttctcccaaagcggagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagc |
214 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||||||||||||| ||||| || |||| |||||||||||| || || |||| || |||||||||| | |
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| T |
48324440 |
atttctcccaaaaaggagctaacaagacgggaccttttgtcaaaaacataaaggcaatctttggtgtttgattgaacggaggttcgtgaatcatagaaat |
48324539 |
T |
|
| Q |
215 |
caatgaagctctccaaaataattcatcctcattcatgtcatg |
256 |
Q |
| |
|
||| |||| ||| | ||| |||||||| || ||||| ||||| |
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|
| T |
48324540 |
caacgaagttcttcgaaacaattcatcatcgttcatatcatg |
48324581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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