View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_16 (Length: 413)
Name: NF18580_low_16
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 51 - 390
Target Start/End: Complemental strand, 4843011 - 4842673
Alignment:
| Q |
51 |
caaatccttatcccttaaaaagagatgaatccttttttgagagaatgagggaattgctagtgactagtagtcttttaacatttaaaattagaatgaccta |
150 |
Q |
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| T |
4843011 |
caaatccttatcccttaaaaagagatgaatccttttttgagagaatgagggaattgctagtgactagtagtcttttaacatt-aaaattagaatgcccta |
4842913 |
T |
|
| Q |
151 |
cgtttatctattctttgatatagtcttgagcgctttatttataagggtagcttatctttgtatgcttctcaaacgtccgatgtgggactgtcatatcact |
250 |
Q |
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| T |
4842912 |
cgtttttctattctttgatattgtcttgagcgctttatttataacggtagcttatctttgtatgcttctcaaacttccgatgtgggacagtcatatcact |
4842813 |
T |
|
| Q |
251 |
ttcttttttaaaagtatagtaaatacgtaacagaatgaagctaactaagagttgagatctccatttatttcaaaactatgtttgtgtttagaagaaaata |
350 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842812 |
ttcttttttaaaagtatagtaaatacgtaatagaatgaagctaactaagagttgagatctccatttatttcaaaactatgtttgtgtttagaagaaaata |
4842713 |
T |
|
| Q |
351 |
ttatgattgataaagttactttttattgatgatattaacc |
390 |
Q |
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| T |
4842712 |
ttatgattgataaagttactttttattgatgatattaacc |
4842673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 60 - 390
Target Start/End: Complemental strand, 4794696 - 4794367
Alignment:
| Q |
60 |
atcccttaaaaagagatgaatcct-tttttgagagaatgagggaattgctagtgactagtagtcttttaacatttaaaattagaatgacctacgtttatc |
158 |
Q |
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||||||| |||| |||| |||||| ||||||||||||||| | |||||||| || | ||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
4794696 |
atcccttgaaaa-agataaatcctctttttgagagaatgaagaaattgctaatgtcgagtagtcttttaaacattagaattagaatgacctacgtttatc |
4794598 |
T |
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| Q |
159 |
tattctttgatatagtcttgagcgctttatttataagggtagcttatctttgtatgcttctcaaacgtccgatgtgggactgtcatatcactttcttttt |
258 |
Q |
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|| |||||| ||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| ||||||||||| ||||| |
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| T |
4794597 |
taatctttg-tattgtcatgagcactttatttataagggtagcttatctccgtatgcttctcaaacgtctgatgtgagacaaccatatcacttttttttt |
4794499 |
T |
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| Q |
259 |
taaaagtatagtaaatacgtaacagaatgaagctaactaagagttgagatctccatttatttcaaaactatgtttgtgtttagaagaaaatattatgatt |
358 |
Q |
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| T |
4794498 |
ttaaagtaaagtaaatatataataaaatgaagctaactaagagttgagttctccatttatttcaaaactatgtttgtgtttagaagaaaatattatgatt |
4794399 |
T |
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| Q |
359 |
gataaagttactttttattgatgatattaacc |
390 |
Q |
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| T |
4794398 |
gctaaagttaatttttattgatgatattaacc |
4794367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 142 - 339
Target Start/End: Complemental strand, 4840496 - 4840298
Alignment:
| Q |
142 |
aatgacctacgtttatctattctttgatatagtcttgagcgctttatttataagggtagcttatctttgtatgcttctcaaacgtccgatgtgggactgt |
241 |
Q |
| |
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|||| ||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
4840496 |
aatgtcctacatttatatattttttgatatagtcttgagtgctttatttataagggtaggttatctctgtatgcttctcaaacgtccgatgtgggacaac |
4840397 |
T |
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| Q |
242 |
catatcactttc-ttttttaaaagtatagtaaatacgtaacagaatgaagctaactaagagttgagatctccatttatttcaaaactatgtttgtgttt |
339 |
Q |
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||||| |||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
4840396 |
tgtatcaatttctttttttaaaagtaaagtaaatacgtaatagaatgaaactaactaagagttgagatctccatttatttcaatactatgtttttgttt |
4840298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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