View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_17 (Length: 411)
Name: NF18580_low_17
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 279 - 397
Target Start/End: Original strand, 40385237 - 40385355
Alignment:
| Q |
279 |
tgttagcttgaaagaaatagtnnnnnnncgagattatatgcaccttacattattacttttatgcgtttagctttgaacacaactcaatcaaaattatgtc |
378 |
Q |
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| T |
40385237 |
tgttagcttgaaagaaatagaaaaaaaacgagattatatgcaccttacattattacttttatgcgtttagctttgaacacaactcaatcaaaattatgtc |
40385336 |
T |
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| Q |
379 |
tgcctgcagtcctttacat |
397 |
Q |
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| T |
40385337 |
tgcctgcagtcctttacat |
40385355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 40385054 - 40385189
Alignment:
| Q |
21 |
actgtttaagcggttaaaatgaagaggagtactattcatcacaaggtttggtgggtggaaataaaattgatgggcccagctatagttataattgtgctat |
120 |
Q |
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| T |
40385054 |
actgtttaagcggttaaaatgaagaggagtgctattcatcacaagg-ttggtgggtggaaataaaactgatgggccca-----------------gctat |
40385135 |
T |
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| Q |
121 |
cgtggtcttttctgaaaaatatatttgttgcatgcagcagcatttctctaaaat |
174 |
Q |
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| T |
40385136 |
cgtggtcttttctgaaaaatatatttgttgcatgcagcagcatttctctaaaat |
40385189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 40385185 - 40385235
Alignment:
| Q |
193 |
aaaattgtgtaactattactttttcatgttttaatttccattttcacaaca |
243 |
Q |
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| T |
40385185 |
aaaattgtgtaactattactttttcatgttttaatttccattttcacaaca |
40385235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 46813182 - 46813093
Alignment:
| Q |
68 |
ttggtgggtggaaataaaattgatgggcccagctatagttataattgtgctatc-gtggtcttttctgaaaaatatatttgttgcatgca |
156 |
Q |
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| T |
46813182 |
ttggtggatggaaataaaattgatgggcccaactatagttataattgtgctatcggtgatcttttctggaaaatatattcgctgcatgca |
46813093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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