View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_19 (Length: 390)
Name: NF18580_low_19
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 193 - 379
Target Start/End: Complemental strand, 4403991 - 4403805
Alignment:
| Q |
193 |
catgaggccatgtcaagtgttccatggggtttatcgttcccatggcctcgcaaggggtacacctctgtcataaaggtctttatagtcaaaaacatgtcca |
292 |
Q |
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| T |
4403991 |
catgaggccatgtcaagtgtcccatggggtttatcgttcccatggcctcgcaaggggtacacctctgtcataaaggtctttatagtcaaaaacatgtcca |
4403892 |
T |
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| Q |
293 |
caatctcatttacacccaaaatctcattcactctttccctcacgctttttgtcttccccagcaaaccaatcatgtttttcttttctt |
379 |
Q |
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| T |
4403891 |
caatctcatttacacccaaaatctcattcactctttccctcacgctttttgtcttccccagcaaaccaatcatgtttttcttttctt |
4403805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 4405388 - 4405202
Alignment:
| Q |
18 |
ccaatggaaaccttacttttaaactcgaaattccaaaaatttggtagtaataaagagagggcttaccactgtcttctgttatactcatgagagatgtttc |
117 |
Q |
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| T |
4405388 |
ccaatggaaaccttacttttaaattcgaaattccaaaaatttggtagtaataaagagagggcttaccactgtcttctgttatactcatgagagatgtttc |
4405289 |
T |
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| Q |
118 |
cagaaaaagatgattgttctttcttttgtgcataatgtttctcaggggtatggccatgacatatcgtcagaaaagcatgaggccatg |
204 |
Q |
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| T |
4405288 |
cagaaaaagatgattgttctttcttttgtgcataatgtttctcaggggtatggccatgacatatcgtcagaaaagcatgaggccatg |
4405202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 21155372 - 21155298
Alignment:
| Q |
298 |
tcatttacacccaaaatctcattcactctttccctcacgctttttgtcttccccagcaaaccaatcatgtttttc |
372 |
Q |
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|||||||||||||||| ||||| |||||| |||||| | |||| ||||||||||||| ||||||||||||||| |
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| T |
21155372 |
tcatttacacccaaaaattcatttactcttcccctcatgtttttcttcttccccagcaacccaatcatgtttttc |
21155298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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