View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_22 (Length: 372)
Name: NF18580_low_22
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_22 |
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| [»] scaffold0098 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 25974670 - 25975016
Alignment:
| Q |
9 |
gaataatatactcgagaagattctaaaaatatggtcagatagagaagtttcatatcctttgataatttctgggatgaacttatccaatttaatgcacgca |
108 |
Q |
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| T |
25974670 |
gaataaaatactcgagaagattctaaaaatatggtcagatagagaagtttcatatcctttgataatttctgggatgaacttatccaatttaatgcatgca |
25974769 |
T |
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| Q |
109 |
tgcaattaaaatacaaaaaatgattgacaaatatgataaattctagatattaccagcttctgatccaagtagttattcc-ttcagcttgagnnnnnnnga |
207 |
Q |
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| T |
25974770 |
tgcaattaaaatacaaaaaatgattgacaaatatgataaattctagatattaccagcttctgctccaagtagttattcctttcagcttgagtttttttga |
25974869 |
T |
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| Q |
208 |
aatctgtcagctcttgcacgaactatagaatgtgtatacattacaagttagttatttgaaaaggnnnnnnnntattaacctataagacagttatctaaca |
307 |
Q |
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| T |
25974870 |
aatctgtcagctcttgcacgaactatagaatgtgtatacattacaagttagttatttgaaaaggaaaaaaaatattaacctataagacagttatctaaca |
25974969 |
T |
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| Q |
308 |
ttctaaatcacctgagctatgttgtattgatgttctaatggcgaact |
354 |
Q |
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| T |
25974970 |
ttctcaatcacctgagctatgttgtattgatgttctaatggcgaact |
25975016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 25959607 - 25959705
Alignment:
| Q |
33 |
aaaaatatggtcagatagagaagtttcatatcctttgataatttctgggatgaacttatccaatttaatgcacgcatgcaattaaaatacaaaaaatgat |
132 |
Q |
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| T |
25959607 |
aaaaacatggttagatggagaagtttcatatc-tttgacaatttctgggatgaacttaaacaatttaatgcacacacgccagtaatatacaaaatatgat |
25959705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 25959430 - 25959505
Alignment:
| Q |
33 |
aaaaatatggtcagatagagaagtttcatatcctttgataatttctgggatgaacttatccaatttaatgcacgca |
108 |
Q |
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| T |
25959430 |
aaaaatatggctagctagagaagtgtcatatcctttgacattttctgtgatgagcttgtacaatttaaagcacgca |
25959505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 11382 - 11433
Alignment:
| Q |
296 |
agttatctaacattctaaatcacctgagctatgttgtattgatgttctaatg |
347 |
Q |
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| T |
11382 |
agttatcaaacattctcaaccacctgagctatgttgtattgatgctctaatg |
11433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 7993 - 8037
Alignment:
| Q |
304 |
aacattctaaatcacctgagctatgttgtattgatgttctaatgg |
348 |
Q |
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| T |
7993 |
aacattctcaaccacctgagttatgttgtattgatgctctaatgg |
8037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 17949445 - 17949400
Alignment:
| Q |
294 |
acagttatctaacattctaaatcacctgagctatgttgtattgatg |
339 |
Q |
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| T |
17949445 |
acagttatcatacattcttaaccacctgagctatgttgtattgatg |
17949400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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