View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_27 (Length: 353)
Name: NF18580_low_27
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 37406145 - 37405821
Alignment:
| Q |
11 |
cacagagaacggcacgcttgttatatcttcttggaaaagatgaggggaatgcaattgaaggagatggtgatgatgaccaaccaagaaaatttccattttt |
110 |
Q |
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| T |
37406145 |
cacagagaacggcacgcttgttatatcttcttggaaaagatgagggaaatgcaattgaaggagatggtgatgatgaccaaccaagaaaatttccattttt |
37406046 |
T |
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| Q |
111 |
atttgaattgtcaagtttgaacaatttgcttccgannnnnnncacggaaccaaccaggcagttttcccttgatttcccatgttccaaagatgaattacaa |
210 |
Q |
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| T |
37406045 |
atttgaattgtcaagtttgaacaatttgcttccgatttttttcaccgaaccaaccaggcagttttcccttgatttcccatgttccaaagctgaattacaa |
37405946 |
T |
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| Q |
211 |
atattacatagaaagcaacaacaacctctgcagggtgcttttgtttctccactttggtgatgagaactgcaaatgtttctgcaagcattgcaaacatgca |
310 |
Q |
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| T |
37405945 |
atattacatagaaagcaacaacaacctctgcagggtgcttttgtttctccactttggtgatgagaactgcaaatgtttctgcaagcattgcaaacatgca |
37405846 |
T |
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| Q |
311 |
cagtagtgtttgtaggagataaatc |
335 |
Q |
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| T |
37405845 |
cagtagtgtttgtaggagataaatc |
37405821 |
T |
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