View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_28 (Length: 342)
Name: NF18580_low_28
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 45975967 - 45976273
Alignment:
| Q |
18 |
attattgaaggggtatattcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtgttgtact |
117 |
Q |
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| T |
45975967 |
attattgaaggggtatattcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtgttgtact |
45976066 |
T |
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| Q |
118 |
tcccattggtggtctatcttctggtctttgtaggcatcgagcgattctcttcaaggtttaagtattgtactgtattggtgtgttaatttactgagatagc |
217 |
Q |
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| T |
45976067 |
tcccattggtggtctatcttctggtctttgtaggcatcgagcgattctcttcaaggtttaagtattgtactgtattggtgtgttaatttactgagatagc |
45976166 |
T |
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| Q |
218 |
tttgtggtgtgtgtagataattaatatgcctgctagtagcatatcaattatcataccaaattttctattttattagtcgcacaaggacgttagtaactat |
317 |
Q |
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| T |
45976167 |
tttgtggtgtgtgtagataattgatatgcctgctagtagcatatcaattatcataccaaattttctattttattagtcgcacaaggacgttagtaactat |
45976266 |
T |
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| Q |
318 |
gcacagg |
324 |
Q |
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| T |
45976267 |
gcacagg |
45976273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 28052450 - 28052311
Alignment:
| Q |
35 |
ttcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtgttgtacttcccattggtggtctat |
134 |
Q |
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| T |
28052450 |
ttccctgtggagcaaggagatctgcaaaaaaggtggaagatggttagtaagcggttgaggaattttcatcagtgtgttgtgcttccagttggtaatttgt |
28052351 |
T |
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| Q |
135 |
cttctggtctttgtaggcatcgagcgattctcttcaaggt |
174 |
Q |
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| T |
28052350 |
ccacgggactctgtaggcatcgcgcaattctcttcaaggt |
28052311 |
T |
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