View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_3 (Length: 685)

Name: NF18580_low_3
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_3
NF18580_low_3
[»] chr2 (36 HSPs)
chr2 (163-667)||(21844450-21844951)
chr2 (163-664)||(21842826-21843325)
chr2 (1-160)||(21844985-21845143)
chr2 (347-474)||(24047360-24047487)
chr2 (303-467)||(21505156-21505320)
chr2 (303-517)||(32619576-32619786)
chr2 (351-468)||(18236318-18236435)
chr2 (384-517)||(15829149-15829278)
chr2 (384-480)||(35031717-35031813)
chr2 (384-524)||(19541052-19541200)
chr2 (378-480)||(17152162-17152264)
chr2 (355-517)||(1733086-1733248)
chr2 (378-482)||(17415196-17415301)
chr2 (351-480)||(30998753-30998882)
chr2 (351-524)||(22510929-22511109)
chr2 (384-480)||(27917987-27918083)
chr2 (393-474)||(21849083-21849163)
chr2 (351-480)||(32276517-32276646)
chr2 (396-480)||(39730474-39730558)
chr2 (378-465)||(18818706-18818793)
chr2 (393-468)||(34063861-34063936)
chr2 (347-480)||(31449935-31450068)
chr2 (415-478)||(17240860-17240923)
chr2 (351-478)||(16593756-16593885)
chr2 (396-458)||(24187993-24188055)
chr2 (444-517)||(27417221-27417303)
chr2 (347-480)||(25474015-25474148)
chr2 (357-465)||(15454550-15454657)
chr2 (395-467)||(18117009-18117080)
chr2 (393-473)||(28278434-28278514)
chr2 (435-478)||(30705268-30705311)
chr2 (415-467)||(22388770-22388822)
chr2 (351-455)||(35707785-35707889)
chr2 (597-646)||(21504224-21504273)
chr2 (384-480)||(19949558-19949654)
chr2 (348-452)||(29647577-29647681)
[»] chr5 (33 HSPs)
chr5 (351-517)||(17382002-17382168)
chr5 (351-517)||(24517336-24517502)
chr5 (386-480)||(16634063-16634157)
chr5 (384-517)||(16622634-16622767)
chr5 (347-480)||(18222471-18222604)
chr5 (303-480)||(22967846-22968023)
chr5 (393-514)||(25680620-25680741)
chr5 (351-480)||(24841735-24841864)
chr5 (347-480)||(15205623-15205754)
chr5 (384-481)||(23157791-23157888)
chr5 (395-468)||(24268581-24268654)
chr5 (395-468)||(24345210-24345283)
chr5 (386-462)||(7742891-7742967)
chr5 (397-480)||(17027555-17027638)
chr5 (384-467)||(24410946-24411029)
chr5 (378-480)||(20694649-20694751)
chr5 (384-465)||(19331526-19331607)
chr5 (347-480)||(25594696-25594829)
chr5 (351-480)||(26070456-26070585)
chr5 (351-467)||(12340031-12340147)
chr5 (384-480)||(20083480-20083576)
chr5 (406-480)||(11274334-11274408)
chr5 (412-517)||(18873009-18873113)
chr5 (351-480)||(24846243-24846372)
chr5 (412-480)||(11997898-11997966)
chr5 (386-480)||(15697340-15697434)
chr5 (387-480)||(26330071-26330165)
chr5 (415-480)||(16603617-16603682)
chr5 (391-468)||(22229826-22229903)
chr5 (412-467)||(19763907-19763962)
chr5 (608-646)||(17028697-17028735)
chr5 (403-480)||(4325361-4325438)
chr5 (404-465)||(29150924-29150985)
[»] chr1 (39 HSPs)
chr1 (384-517)||(25494446-25494579)
chr1 (303-480)||(34381642-34381819)
chr1 (355-517)||(30675470-30675641)
chr1 (303-524)||(26657410-26657640)
chr1 (420-524)||(23519719-23519822)
chr1 (351-468)||(50047163-50047280)
chr1 (393-480)||(26102081-26102168)
chr1 (347-480)||(15416977-15417110)
chr1 (351-480)||(31313534-31313663)
chr1 (313-480)||(15298873-15299040)
chr1 (390-480)||(25727913-25728003)
chr1 (390-480)||(25736321-25736411)
chr1 (351-480)||(8247661-8247790)
chr1 (384-465)||(12810337-12810418)
chr1 (351-480)||(18795163-18795292)
chr1 (384-480)||(23223426-23223523)
chr1 (351-467)||(11770011-11770127)
chr1 (313-449)||(25373730-25373866)
chr1 (356-479)||(18391069-18391192)
chr1 (454-517)||(23521687-23521750)
chr1 (394-480)||(12423918-12424004)
chr1 (351-480)||(30781742-30781871)
chr1 (388-480)||(19257807-19257899)
chr1 (393-473)||(19884196-19884276)
chr1 (403-479)||(27461186-27461262)
chr1 (12-104)||(13119795-13119884)
chr1 (346-479)||(21548625-21548758)
chr1 (351-480)||(25730575-25730704)
chr1 (388-480)||(18301007-18301099)
chr1 (351-480)||(21451820-21451948)
chr1 (396-480)||(13807756-13807840)
chr1 (165-293)||(14136483-14136611)
chr1 (607-646)||(25726309-25726348)
chr1 (607-646)||(25734717-25734756)
chr1 (394-524)||(26854271-26854407)
chr1 (25-119)||(14136686-14136780)
chr1 (384-430)||(21550933-21550979)
chr1 (384-462)||(25126495-25126573)
chr1 (406-452)||(25266377-25266423)
[»] chr6 (16 HSPs)
chr6 (309-528)||(16387202-16387423)
chr6 (351-528)||(22262332-22262509)
chr6 (351-481)||(15574907-15575036)
chr6 (351-480)||(26512781-26512910)
chr6 (351-480)||(26517897-26518026)
chr6 (393-468)||(17860464-17860539)
chr6 (351-480)||(14924421-14924550)
chr6 (347-470)||(13759465-13759588)
chr6 (301-515)||(30355258-30355471)
chr6 (359-480)||(9943153-9943274)
chr6 (357-492)||(16527878-16528013)
chr6 (351-465)||(32930491-32930605)
chr6 (351-480)||(12972388-12972517)
chr6 (384-465)||(14768287-14768368)
chr6 (389-480)||(1755565-1755656)
chr6 (351-427)||(9396656-9396732)
[»] chr3 (34 HSPs)
chr3 (303-480)||(8402554-8402731)
chr3 (313-514)||(25919432-25919635)
chr3 (312-467)||(21829149-21829304)
chr3 (412-517)||(5632500-5632605)
chr3 (353-524)||(10341780-10341950)
chr3 (351-517)||(33914525-33914695)
chr3 (384-524)||(26297764-26297910)
chr3 (386-480)||(13911282-13911376)
chr3 (393-517)||(11474870-11475003)
chr3 (385-517)||(18065832-18065953)
chr3 (384-480)||(2729622-2729718)
chr3 (412-480)||(18474214-18474281)
chr3 (412-480)||(28422496-28422563)
chr3 (412-480)||(30493268-30493336)
chr3 (386-480)||(23007069-23007163)
chr3 (393-467)||(27374468-27374542)
chr3 (351-480)||(21017859-21017988)
chr3 (351-480)||(26387848-26387977)
chr3 (397-480)||(27415199-27415279)
chr3 (393-480)||(19545987-19546074)
chr3 (351-468)||(1475296-1475413)
chr3 (384-513)||(19263869-19263998)
chr3 (351-468)||(25188740-25188856)
chr3 (403-465)||(23908289-23908351)
chr3 (386-480)||(25883120-25883214)
chr3 (385-466)||(19219229-19219310)
chr3 (393-466)||(33577758-33577831)
chr3 (606-646)||(10342184-10342224)
chr3 (347-467)||(12409436-12409556)
chr3 (412-479)||(19285142-19285209)
chr3 (420-479)||(26797252-26797311)
chr3 (394-467)||(4780704-4780776)
chr3 (351-464)||(12573272-12573385)
chr3 (351-464)||(13549736-13549849)
[»] chr8 (33 HSPs)
chr8 (351-487)||(12956471-12956607)
chr8 (351-517)||(14977067-14977240)
chr8 (351-517)||(28901307-28901473)
chr8 (309-480)||(31436419-31436590)
chr8 (313-516)||(14424772-14424983)
chr8 (360-480)||(26882399-26882519)
chr8 (378-517)||(27097758-27097907)
chr8 (303-480)||(16052281-16052458)
chr8 (351-468)||(35135438-35135555)
chr8 (412-480)||(24584728-24584796)
chr8 (378-480)||(5153767-5153869)
chr8 (351-480)||(5570145-5570274)
chr8 (351-480)||(13081941-13082070)
chr8 (351-480)||(16054276-16054405)
chr8 (351-480)||(30543745-30543872)
chr8 (351-517)||(24120213-24120380)
chr8 (412-479)||(28074557-28074623)
chr8 (378-468)||(10866997-10867087)
chr8 (394-480)||(28902114-28902200)
chr8 (351-468)||(6888206-6888322)
chr8 (384-468)||(32239302-32239386)
chr8 (393-480)||(12774847-12774934)
chr8 (415-480)||(30851103-30851168)
chr8 (404-480)||(28260293-28260369)
chr8 (351-442)||(13530147-13530238)
chr8 (351-442)||(13619686-13619777)
chr8 (603-642)||(16051949-16051988)
chr8 (351-468)||(29047335-29047449)
chr8 (482-524)||(11437540-11437582)
chr8 (415-461)||(13583532-13583578)
chr8 (447-480)||(31232134-31232167)
chr8 (347-431)||(6358676-6358760)
chr8 (420-472)||(29291821-29291873)
[»] chr7 (41 HSPs)
chr7 (25-125)||(4500436-4500536)
chr7 (347-480)||(22067810-22067943)
chr7 (357-480)||(1255217-1255340)
chr7 (303-517)||(7142032-7142255)
chr7 (348-480)||(17881502-17881634)
chr7 (313-480)||(29544463-29544630)
chr7 (315-480)||(18496511-18496676)
chr7 (355-480)||(23124886-23125011)
chr7 (373-480)||(1074456-1074563)
chr7 (387-481)||(21545802-21545896)
chr7 (355-524)||(20461599-20461776)
chr7 (351-474)||(7956163-7956286)
chr7 (384-478)||(4828806-4828900)
chr7 (396-468)||(8309047-8309118)
chr7 (352-480)||(21471780-21471907)
chr7 (384-517)||(315200-315330)
chr7 (378-514)||(3268927-3269071)
chr7 (384-508)||(30405611-30405741)
chr7 (351-467)||(46054680-46054796)
chr7 (303-480)||(7815257-7815434)
chr7 (384-480)||(7372569-7372666)
chr7 (25-118)||(8837444-8837536)
chr7 (303-480)||(2353249-2353421)
chr7 (412-480)||(5312789-5312857)
chr7 (412-480)||(37144963-37145031)
chr7 (356-466)||(9066119-9066227)
chr7 (359-517)||(20470768-20470935)
chr7 (25-127)||(6646124-6646226)
chr7 (399-480)||(2632440-2632521)
chr7 (603-648)||(3400250-3400295)
chr7 (412-468)||(7361648-7361705)
chr7 (406-517)||(9761373-9761493)
chr7 (416-517)||(24596962-24597071)
chr7 (415-517)||(7494752-7494853)
chr7 (406-480)||(9801878-9801952)
chr7 (412-480)||(12358765-12358833)
chr7 (412-467)||(4977837-4977892)
chr7 (395-477)||(2351023-2351105)
chr7 (398-452)||(9755829-9755883)
chr7 (398-452)||(9800625-9800679)
chr7 (351-435)||(20446221-20446305)
[»] chr4 (33 HSPs)
chr4 (351-517)||(18897973-18898139)
chr4 (313-480)||(1676299-1676466)
chr4 (313-480)||(1682827-1682994)
chr4 (351-480)||(22119628-22119757)
chr4 (378-517)||(10576462-10576609)
chr4 (351-480)||(21167711-21167840)
chr4 (315-524)||(9288156-9288373)
chr4 (387-517)||(47024723-47024853)
chr4 (395-480)||(13275748-13275833)
chr4 (377-478)||(46647204-46647305)
chr4 (347-462)||(5906742-5906857)
chr4 (303-468)||(25315247-25315412)
chr4 (347-467)||(24925783-24925903)
chr4 (387-467)||(27302796-27302876)
chr4 (351-517)||(34864253-34864424)
chr4 (406-481)||(10320222-10320297)
chr4 (351-517)||(19601780-19601955)
chr4 (386-480)||(26159773-26159867)
chr4 (384-475)||(9782992-9783083)
chr4 (313-480)||(17339817-17339984)
chr4 (396-473)||(1695858-1695935)
chr4 (304-455)||(12111360-12111510)
chr4 (404-480)||(15192238-15192314)
chr4 (393-451)||(23353647-23353705)
chr4 (435-480)||(17026700-17026745)
chr4 (412-481)||(18444293-18444362)
chr4 (415-468)||(20044224-20044277)
chr4 (351-480)||(21077215-21077344)
chr4 (405-467)||(4732786-4732848)
chr4 (606-646)||(5676664-5676704)
chr4 (397-473)||(19101111-19101187)
chr4 (420-480)||(29437522-29437582)
chr4 (351-427)||(31859937-31860013)
[»] scaffold0171 (2 HSPs)
scaffold0171 (397-467)||(21425-21495)
scaffold0171 (393-455)||(6220-6282)
[»] scaffold0011 (1 HSPs)
scaffold0011 (416-517)||(228144-228252)
[»] scaffold0043 (1 HSPs)
scaffold0043 (384-469)||(58760-58845)
[»] scaffold0185 (1 HSPs)
scaffold0185 (378-468)||(1452-1542)
[»] scaffold1026 (1 HSPs)
scaffold1026 (386-467)||(1850-1931)
[»] scaffold0188 (1 HSPs)
scaffold0188 (351-480)||(26959-27087)
[»] scaffold0190 (1 HSPs)
scaffold0190 (313-480)||(11701-11868)
[»] scaffold0065 (1 HSPs)
scaffold0065 (474-517)||(12358-12401)


Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 163 - 667
Target Start/End: Complemental strand, 21844951 - 21844450
Alignment:
Q  163 ttggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtt 262  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  21844951 ttggttcaagaggatagtgacaccgatgaagactcccctagtctagaggtaatggggttgtttgtgagatgatacaacctctatgttcaataaaatggtt 21844852  T
Q  263 tgaaacataatgaataaaatttgattaacttaggaag-cttatgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttga 361  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  21844851 tgaaacataatgactaaaatttgattaacttaggaaggcttatgacagagcatcatatgatattttaggtaaaaattttattagatttctttgcatttga 21844752  T
Q  362 agacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcat 461  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  21844751 agacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatttactcttatcctaaatcat 21844652  T
Q  462 gcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacattaagtgagggagtattttctactgcctcatctgccatgcgcatg 561  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21844651 gcaactttacaggtgttttatagtgagaaattatgtaaatcggcaaatcaagacattaagtgagggagtattttctactgcctcatctgccatgcgcatg 21844552  T
Q  562 gatgtgggcagaaaaggaagtttgcttgnnnnnnnaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtagtaataattcaatat 661  Q
    |||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  21844551 gatgtgagcagaaaaggaagtttgcttg-tttttcaagttagatcggtggaaaaaacacagttttcttctcttaaacccta---agtaataattcaatat 21844456  T
Q  662 aaatag 667  Q
    ||||||    
T  21844455 aaatag 21844450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 163 - 664
Target Start/End: Complemental strand, 21843325 - 21842826
Alignment:
Q  163 ttggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtt 262  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  21843325 ttggttcaagaggatagttataccgatgaagactcccctagtctagaggtaatggggttgtttgtgagatgatacaacctctatgttcaataaaatggtt 21843226  T
Q  263 tgaaacataatgaataaaatttgattaacttaggaag-cttatgacaga-gtatcatatgatattttaggtaaaatttttattagatttatttgcatttg 360  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  21843225 tgaaacataatcactaaaatttgattaacttaggaagacttatgaaagaagcatcatatgatattttaggtaaattttttattagatttctttgcatttg 21843126  T
Q  361 aagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatca 460  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21843125 aagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatca 21843026  T
Q  461 tgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacattaagtgagggagtattttctactgcctcatctgccatgcgcat 560  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21843025 tgcaactctataggtgttttatagtgagaaattatgtaaatcggaaaatcaagacattaagtgagggagtattttctactgcctcatgtgccatgcgcat 21842926  T
Q  561 ggatgtgggcagaaaaggaagtttgcttgnnnnnnnaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtagtaataattcaata 660  Q
    |||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  21842925 ggatctgggcagaaaaggaagtttgcttg-tttttcaagttagatcggtggaaaaaacacagttttcttctcttaaacccta---agtaataattcaata 21842830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 21845143 - 21844985
Alignment:
Q  1 ggaatggcaaccaaaaggtaacctccatcaaggagtctgaaaatctcaacactctaggcatcaccatcttatttggaaagctcaaggaacatgagcatga 100  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21845143 ggaatggcaaccaaa-ggtaacctccatcaaggactctgaaaatctcaacactataggcatcaccatcttatttggaaagctcaaggaacatgagcatga 21845045  T
Q  101 aatcgcaaggttgaaagttggtgaggatatatagtcaagaagaatgagaagaagtacatt 160  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21845044 aatcgcaaggttgaaagttagtgaggatatatagtcaagaagaatgagaagaagtacatt 21844985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 347 - 474
Target Start/End: Original strand, 24047360 - 24047487
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||||||||||||  ||||||   || ||||| || | ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||    
T  24047360 tttatttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattcact 24047459  T
Q  447 tttatcctaaatcatgcaactctatagg 474  Q
    |||||||||||| ||||||||| |||||    
T  24047460 tttatcctaaattatgcaactccatagg 24047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 303 - 467
Target Start/End: Complemental strand, 21505320 - 21505156
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    ||||| ||| ||||||||||||||| ||  |  |||||| ||  ||| |||||||||||||||||||||  ||  | ||| || ||||| |||||||||     
T  21505320 atgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttg 21505221  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    |||| ||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  21505220 aggagcatattgtattgttttcactcgagtctttataatttacttttatcctaaatcatgcaact 21505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 303 - 517
Target Start/End: Original strand, 32619576 - 32619786
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    |||||||| |||||||||||||||| ||  | ||||||| ||  ||| ||||||||||||||||||||| |||  |  || ||||||||  |||||||      
T  32619576 atgacagaatatcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttag 32619675  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatc 502  Q
    |||||||     ||||||||||| ||||||| |||||||  |||||  ||||| |||||| ||||| ||||||||||| ||| ||||||| |||||| ||    
T  32619676 aggaacaa----tattgttttcaatcgagtcgttgtaatgcactttcgtcctagatcatgtaactccataggtgttttgtagcgagaaatcatgtaattc 32619771  T
Q  503 ggcaaatcaagacat 517  Q
    | |||||||||||||    
T  32619772 gacaaatcaagacat 32619786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 351 - 468
Target Start/End: Complemental strand, 18236435 - 18236318
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| |||| ||||||||||||| || ||||| ||||||||| || ||||  || ||||||||||||||||||  || ||||| |||||||    
T  18236435 tttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggtttgagaaacaatttatattgttttcattcgagttgttataattcactttta 18236336  T
Q  451 tcctaaatcatgcaactc 468  Q
    || |||||||||||||||    
T  18236335 tcttaaatcatgcaactc 18236318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 15829149 - 15829278
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttata 483  Q
    |||||||| ||||||||| ||||||   |||||||||||||| |  |||| ||||||    |||||||||||||||||||||||| ||| |||||||  |    
T  15829149 aggagttgtcaatggtttgaggaacgcattgtattgttttcacttaagtcgttgtaa----cttttatcctaaatcatgcaactccatatgtgttttgca 15829244  T
Q  484 gtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||||| |||||||||| |||||||||||||    
T  15829245 gtgagaaatcatgtaaatcgacaaatcaagacat 15829278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 480
Target Start/End: Original strand, 35031717 - 35031813
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||  |||||||| |||||||| |||||||||||||| ||||||| |||||| |||||||||||||| ||||||||| || |||||||||||    
T  35031717 aggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattccataggtgtttt 35031813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 384 - 524
Target Start/End: Original strand, 19541052 - 19541200
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt------ 477  Q
    ||||||||  |||||||| |||||| | |||||||  ||||| |||||||||||||||| | ||||||||||||||||||||||| ||||||||          
T  19541052 aggagttgttaatggtttgaggaactttttgtatttatttcaatcgagtcattgtaattcagttttatcctaaatcatgcaactccataggtgttttgag 19541151  T
Q  478 --tttatagtgagaaattatgtaaatcggcaaatcaagacattaagtga 524  Q
      ||| ||||||||||| |||||||||||||||  ||||||| ||||||    
T  19541152 tctttctagtgagaaatcatgtaaatcggcaaaataagacatcaagtga 19541200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 17152162 - 17152264
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt 477  Q
    ||||| |||||||| ||||||||| ||||| || ||||||| |||||||||||||| |||||||| ||||||||| ||| |||||||||||| || ||||    
T  17152162 atttagaggagttgtcaatggtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttttatcgtaattcatgcaactctgtaagtgt 17152261  T
Q  478 ttt 480  Q
    |||    
T  17152262 ttt 17152264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 355 - 517
Target Start/End: Original strand, 1733086 - 1733248
Alignment:
Q  355 catttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcct 454  Q
    ||||||||||||||| |  ||  | ||| |||||||| |||||  || || ||||  |||||||||||||||| ||||| |||||||| | |||||||||    
T  1733086 catttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaacaaattgtattgttttcatttgagtcgttgtaattcagttttatcct 1733185  T
Q  455 aaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    | | |||| |||| |||||||||||| ||||||| ||| |||||||||  |||| ||||||||    
T  1733186 agagcatgaaactatataggtgttttgtagtgaggaatcatgtaaatcatcaaagcaagacat 1733248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 378 - 482
Target Start/End: Complemental strand, 17415301 - 17415196
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactct-ataggtg 476  Q
    ||||| |||||||| |||||| || |||||  | ||||||||||||||||||| | ||||||||||| ||||||| ||||| |||||||||| |||||||    
T  17415301 atttagaggagttgtcaatgggttgaggaaatttttgtattgttttcattcgattgattgtaatttagttttatcgtaaataatgcaactctcataggtg 17415202  T
Q  477 ttttat 482  Q
    ||||||    
T  17415201 ttttat 17415196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 30998753 - 30998882
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||| |||||||||||||||  ||  | ||| | |||||| ||||||||| |||||||| |||||||||||||| | ||||| ||||| || | |||||    
T  30998753 tttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagtttta 30998852  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| ||||| |||||| |||||||||||    
T  30998853 tcctagatcatacaactccataggtgtttt 30998882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 524
Target Start/End: Original strand, 22510929 - 22511109
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| ||||| |   |||| ||| ||||| | ||| ||||||||||||| | ||||||| ||||||||||||||  |||||||||| ||||    
T  22510929 tttgcatttgaaggcaaattataagtaaattagaggagcttccattggttttaggaactt-ttgtatttttttcattcgagtcgctgtaatttacgttta 22511027  T
Q  451 tcctaaatcatgcaactctatag--------gtgttttatagtgagaaattatgtaaatcggcaaatcaagacattaagtga 524  Q
    ||||||||  ||||||| |||||         |||||| ||||||||||| ||||||||||  |||||||||||| ||||||    
T  22511028 tcctaaattgtgcaactatatagtgttttgattgttttgtagtgagaaatcatgtaaatcgaaaaatcaagacatcaagtga 22511109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 480
Target Start/End: Complemental strand, 27918083 - 27917987
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| || |||||| |||||| |   |||||||||||||| ||||| |||||||| |||||||| |||||||||||||||| |||||||||||    
T  27918083 aggagttgtcattggtttgaggaacgttgggtattgttttcatttgagtcgttgtaattcacttttatactaaatcatgcaactccataggtgtttt 27917987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 21849163 - 21849083
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctatagg 474  Q
    ||||||||| |||||||| ||||||||||||| || |||||||||||||| | ||||||| ||||||||||||||| |||||    
T  21849163 caatggtttgaggaacattttgtattgttttcttt-gagtcattgtaattcagttttatcataaatcatgcaactccatagg 21849083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 32276646 - 32276517
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||  ||||||   || ||||| ||||| || ||||||||| | |||||| ||| |||||||| |||||||||||||||||| |  ||||    
T  32276646 tttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaattgaagttta 32276547  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    | ||||||||| |||||| || ||||||||    
T  32276546 ttctaaatcattcaactccatgggtgtttt 32276517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 396 - 480
Target Start/End: Original strand, 39730474 - 39730558
Alignment:
Q  396 tggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| |||||||| || ||| ||||| |||| |||| |||||||| ||||||||||||||||||||||||||  |||||||||    
T  39730474 tggtttaaggaacattttctatagtttttattcaagtcgttgtaattcacttttatcctaaatcatgcaactctgcaggtgtttt 39730558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 18818706 - 18818793
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaa 465  Q
    ||||| |||| ||||| ||||||| |||||||| || ||||||||||||| ||||| ||| |||||| ||||||| ||||||||||||    
T  18818706 atttaaaggatttgccgatggtttaaggaacattttatattgttttcatttgagtcgttgaaatttagttttatcataaatcatgcaa 18818793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 393 - 468
Target Start/End: Complemental strand, 34063936 - 34063861
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    |||||||||  ||||| | |||||||||||||||||||||  |||||||| ||| |||||||||||||||||||||    
T  34063936 caatggtttgtggaactttttgtattgttttcattcgagttgttgtaattcactattatcctaaatcatgcaactc 34063861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 347 - 480
Target Start/End: Original strand, 31449935 - 31450068
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    ||||||||||||||||||||| | |   || ||||| ||||||||   ||||||||||||| || ||||||| |||||||| |||||||| ||| | | |    
T  31449935 tttatttgcatttgaagacaatttataagtcatttagaggagttgtagatggttttaggaatattttgtatttttttcattagagtcattataaatcagt 31450034  T
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||  |||| ||| |||||||| ||||||||||||    
T  31450035 ttattccttaattatgcaactttataggtgtttt 31450068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 17240923 - 17240860
Alignment:
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtt 478  Q
    ||||||||||||||||||| | |||||||| |||||| |||||||||||||||  |||||||||    
T  17240923 tattgttttcattcgagtcgtcgtaatttagttttattctaaatcatgcaacttcataggtgtt 17240860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 478
Target Start/End: Complemental strand, 16593885 - 16593756
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaaca--tgttgtattgttttcattcgagtcattgtaatttacttt 448  Q
    |||||||||||||||||||||  |   | ||| |||||||| ||||||||| | |||||  | || ||||||||||| ||||||  || ||||| | |||    
T  16593885 tttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaacacatattatattgttttcactcgagttgttttaattcagttt 16593786  T
Q  449 tatcctaaatcatgcaactctataggtgtt 478  Q
    ||||||| |||||||||||| |||||||||    
T  16593785 tatcctagatcatgcaactccataggtgtt 16593756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 24187993 - 24188055
Alignment:
Q  396 tggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaat 458  Q
    |||||| |||||| | ||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  24187993 tggtttaaggaactttttgtattgtattcattcgagtcattgtgattcacttttatcctaaat 24188055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 517
Target Start/End: Complemental strand, 27417303 - 27417221
Alignment:
Q  444 acttttatcctaaatcatgcaactctataggtgtttta---------tagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||||||||||||||||||||| ||||||||||||         ||||||||||| |||||||||| |||||||||||||    
T  27417303 acttttatcctaaatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacat 27417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 480
Target Start/End: Original strand, 25474015 - 25474148
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    ||||||| |||||||||||||||||  ||  | ||| |||||||| |||| |||| |||||||| ||| |||| ||||| || || |  ||||||| | |    
T  25474015 tttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgtttgaggaacatattgaattggtttcactcaagacgctgtaattcagt 25474114  T
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
     |||||||| |||||||||||| | |||||||||    
T  25474115 attatcctagatcatgcaactccaaaggtgtttt 25474148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 465
Target Start/End: Complemental strand, 15454657 - 15454550
Alignment:
Q  357 tttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaa 456  Q
    |||||||||||||||   || ||||| |||||||| | ||| ||| |||| ||| ||||||||||||| || ||||| |||| ||| | |||||||||||    
T  15454657 tttgaagacaaataataggtcatttaaaggagttgtctatgctttaaggatcattttgtattgttttcttttgagtcgttgt-attcatttttatcctaa 15454559  T
Q  457 atcatgcaa 465  Q
    |||||||||    
T  15454558 atcatgcaa 15454550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 395 - 467
Target Start/End: Original strand, 18117009 - 18117080
Alignment:
Q  395 atggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    ||||||| | |||||| |||||||||||||||| |||||||||||||| ||||| |||| |||| ||||||||    
T  18117009 atggtttgacgaacattttgtattgttttcatttgagtcattgtaattcactttaatcc-aaataatgcaact 18117080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 473
Target Start/End: Complemental strand, 28278514 - 28278434
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctatag 473  Q
    ||||||||| | ||||||  |||||| |||||| | ||||| |||||||| |||||||||||| |||||||||||| ||||    
T  28278514 caatggtttgaagaacatagtgtattattttcacttgagtcgttgtaattcacttttatcctagatcatgcaactccatag 28278434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 30705268 - 30705311
Alignment:
Q  435 ttgtaatttacttttatcctaaatcatgcaactctataggtgtt 478  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  30705268 ttgtaatttacttttatcctaaatcatgcaacttcataggtgtt 30705311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 22388822 - 22388770
Alignment:
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    ||||||||||||| |||||||||||||  | ||||||||| ||||||||||||    
T  22388822 tattgttttcatttgagtcattgtaatccagttttatcctgaatcatgcaact 22388770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 455
Target Start/End: Original strand, 35707785 - 35707889
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||| ||||||||||||||||  ||  | ||| || ||||| ||||||||| || |||||||||||||||||||| | || |  |||||||| | |||||    
T  35707785 tttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaacatgttgtattgttttcacttgatttgttgtaattcagtttta 35707884  T
Q  451 tccta 455  Q
    |||||    
T  35707885 tccta 35707889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 646
Target Start/End: Complemental strand, 21504273 - 21504224
Alignment:
Q  597 aagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagta 646  Q
    ||||||| |||||||||||| | |||||||||||||||||| || |||||    
T  21504273 aagttaggtcggtggaaaaagctcagttttcttctcttaaatccgaagta 21504224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 480
Target Start/End: Complemental strand, 19949654 - 19949558
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||  ||| |||| |||||||| ||||||| |||||| | ||||| ||||||| || ||||||  || || ||| ||||| |||||||||||    
T  19949654 aggagttgttaatagtttgaggaacatattgtattattttcacttgagtcgttgtaatatagttttattatagataatgaaactccataggtgtttt 19949558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 452
Target Start/End: Complemental strand, 29647681 - 29647577
Alignment:
Q  348 ttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactt 447  Q
    |||||||||||||||| ||||| |   || | ||| || ||||| || || ||| |||||| | || ||||||||||||| ||||| |||||||| ||||    
T  29647681 ttatttgcatttgaaggcaaattagaagtcaattagagtagttgtcattgatttgaggaactttttatattgttttcatttgagtcgttgtaattcactt 29647582  T
Q  448 ttatc 452  Q
    |||||    
T  29647581 ttatc 29647577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 351 - 517
Target Start/End: Complemental strand, 17382168 - 17382002
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| |||||||||||||| || | || ||||| || |||||||    
T  17382168 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttcactcaaatcgttgtatttcactttta 17382069  T
Q  451 tcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||||||||||||| |||  ||||||| ||||||||||| |||||||||| |||||||||||||    
T  17382068 tcctaaatcatgcaactttatgagtgttttgtagtgagaaatcatgtaaatcgtcaaatcaagacat 17382002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 351 - 517
Target Start/End: Original strand, 24517336 - 24517502
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| ||||||||||||||  |||||| |||||||| || ||||    
T  24517336 tttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattcacattta 24517435  T
Q  451 tcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    |||| ||||||| ||||| ||||||||||| || | |||||| ||||||||||| ||||||| ||||    
T  24517436 tccttaatcatgtaactccataggtgttttgtaataagaaatcatgtaaatcggtaaatcaatacat 24517502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 16634063 - 16634157
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| ||||||||| || ||||| |||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||    
T  16634063 gagttgtcaatggtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgtttt 16634157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 16622767 - 16622634
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttata 483  Q
    |||||||| ||||||||| |||||||||||||||||| |||| || | |  |||||||  |||||||||||| |||||||||||  |||||||||||  |    
T  16622767 aggagttgtcaatggtttgaggaacatgttgtattgtattcactctatttgttgtaatacacttttatcctagatcatgcaacttcataggtgttttgca 16622668  T
Q  484 gtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||||| |||||||| | |||||||||||||    
T  16622667 gtgagaaatcatgtaaattgacaaatcaagacat 16622634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 347 - 480
Target Start/End: Original strand, 18222471 - 18222604
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||  ||||||||||||||||  ||  | ||| | |||||| ||||||||| || ||||| |||||||||||| | |||||||||||||||| |||    
T  18222471 tttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattgttttaactcgagtcattgtaattcact 18222570  T
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||||||||||||| || |||||||||||    
T  18222571 tttatcctaaatcatgcaaatccataggtgtttt 18222604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 303 - 480
Target Start/End: Complemental strand, 22968023 - 22967846
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    ||||| ||||||||||||||||||||||  |  |||||| ||| ||| ||||||| | |||||||||||  || | |||| ||||||||  ||||||||     
T  22968023 atgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtttg 22967924  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| ||||| ||||||||||| ||||| ||||||| |||| |||| ||||| ||| ||||  |||||||||||    
T  22967923 aggaacatattgtactgttttcattcaagtcaatgtaattcacttgtatcataaataatgaaacttcataggtgtttt 22967846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 393 - 514
Target Start/End: Original strand, 25680620 - 25680741
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtgagaaat 492  Q
    ||||||||| |||||||| |||||||||||||| ||||||| |||||||| | |||||| |||||||||||||||  ||||||||||| |||| |||| |    
T  25680620 caatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcaattttattctaaatcatgcaacttcataggtgttttgtagtaagaatt 25680719  T
Q  493 tatgtaaatcggcaaatcaaga 514  Q
     |||||||||| |||| |||||    
T  25680720 catgtaaatcgacaaaccaaga 25680741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 24841735 - 24841864
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||||||||||| ||   |  || |||||||  ||||||||| |||||||| |||||||||||||| ||||||| |||||| | |||||||    
T  24841735 tttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcactttta 24841834  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||| ||||| |||||||||||    
T  24841835 tcctagatcatggaactccataggtgtttt 24841864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 347 - 480
Target Start/End: Original strand, 15205623 - 15205754
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    ||||||||||||| || ||||||||  ||  | ||| |||||||| || |||||| |||||||| |||||||||||||| ||||||| |||||||| | |    
T  15205623 tttatttgcatttaaatacaaataagatg--agttaaaggagttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagt 15205720  T
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||| ||||| ||||||||| || |||||||||||    
T  15205721 tttctcctagatcatgcaattccataggtgtttt 15205754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 481
Target Start/End: Complemental strand, 23157888 - 23157791
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttta 481  Q
    |||||||| ||||||||| |||||| | | |||||||||||||| ||||| |||||||| ||||||||| |||||||||||| |  ||||||||||||    
T  23157888 aggagttgtcaatggtttgaggaacttttggtattgttttcatttgagtcgttgtaattcacttttatcataaatcatgcaaatgcataggtgtttta 23157791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 24268581 - 24268654
Alignment:
Q  395 atggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    ||||||| |||||||| |||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||    
T  24268581 atggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24268654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 24345210 - 24345283
Alignment:
Q  395 atggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    ||||||| |||||||| |||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||    
T  24345210 atggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24345283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 7742967 - 7742891
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatg 462  Q
    |||||| ||||||||| | |||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||    
T  7742967 gagttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattcacttttatcctaaatcatg 7742891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 397 - 480
Target Start/End: Original strand, 17027555 - 17027638
Alignment:
Q  397 ggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||||| ||| |||||||||| | ||||| |||||||| ||||||||||||||||| ||||||| |||||||||||    
T  17027555 ggtttgaggaacatattgaattgttttcacttgagtcgttgtaattcacttttatcctaaatcacgcaactccataggtgtttt 17027638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 467
Target Start/End: Complemental strand, 24411029 - 24410946
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    |||||||| ||||||||| ||||| || |||||||||||||||| ||||| |||||||| | |||||||||||||| |||||||    
T  24411029 aggagttgtcaatggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaatcgtgcaact 24410946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 20694649 - 20694751
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt 477  Q
    ||||| |||| ||| ||||||||| |||||| | ||||||||||||||||||||||||||||||| | |||||||| |||| || |||||  ||| ||||    
T  20694649 atttagaggatttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattcagttttatcccaaattattcaactgcatatgtgt 20694748  T
Q  478 ttt 480  Q
    |||    
T  20694749 ttt 20694751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 384 - 465
Target Start/End: Original strand, 19331526 - 19331607
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaa 465  Q
    |||||||| |||| |||| || ||| | ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  19331526 aggagttgtcaattgtttgagaaactttttgtattgtgttcattcgagtcgttgtaatttagttttatcctaaatcatgcaa 19331607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 347 - 480
Target Start/End: Complemental strand, 25594829 - 25594696
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||||||||||||||||||||  ||  | ||| |||| ||  ||||||||| |||||||| |||||||||||||| | ||||  ||||| || | |    
T  25594829 tttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtattgttttcactggagttgttgtatttcatt 25594730  T
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||| ||||||||  ||| |||||||    
T  25594729 tttatcctaaatgatgcaacttcatatgtgtttt 25594696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 26070456 - 26070585
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||| ||| |||||||   || ||||| |||||||| ||||  ||| ||||| || | ||||||||||||||||||| | ||||||| | |||||    
T  26070456 tttgcattttaaggcaaataagaggtcatttagaggagttgtcaatcatttgaggaaaatttagtattgttttcattcgagttaatgtaattcagtttta 26070555  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    || ||||||||||||||| ||| |||||||    
T  26070556 tcataaatcatgcaactccataagtgtttt 26070585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 12340147 - 12340031
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| || |||| |||||| | | |||||||||||| | |||||    
T  12340147 tttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaacatattatattattttcacttgtgtcattgtaattcagtttta 12340048  T
Q  451 tcctaaatcatgcaact 467  Q
    | ||| |||||||||||    
T  12340047 tactagatcatgcaact 12340031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 480
Target Start/End: Original strand, 20083480 - 20083576
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| |||| |||| |||||||| || ||||||||| ||||||||  |||||||| | || ||||||||||||||||| || |||||||||||    
T  20083480 aggagttgtcaatagtttgaggaacattttttattgtttttattcgagtatttgtaattcagttctatcctaaatcatgcaattccataggtgtttt 20083576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 480
Target Start/End: Complemental strand, 11274408 - 11274334
Alignment:
Q  406 aacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||||||||||| | ||| | ||| || || |||||||||||||||||||||||| |||||||||||    
T  11274408 aacatattgtattgttttcacttgagccgttgcaacttgcttttatcctaaatcatgcaactccataggtgtttt 11274334  T

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Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 412 - 517
Target Start/End: Complemental strand, 18873113 - 18873009
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc-tataggtgttttatagtgagaaattatgtaaatcggcaaatc 510  Q
    ||||||||||||||||||||||  | ||||| ||||| ||| ||||||||||||||| | || ||||||| ||||| ||||||||||||| ||  |||||    
T  18873113 ttgtattgttttcattcgagtcgct-taattcacttt-atcttaaatcatgcaactcctttaagtgttttgtagtgtgaaattatgtaaaacgataaatc 18873016  T
Q  511 aagacat 517  Q
    |||||||    
T  18873015 aagacat 18873009  T

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Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 24846243 - 24846372
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||   || ||||| |||| ||  | ||||||| ||||| || || |||| ||||||||||||| || |||||||| |||      
T  24846243 tttgcatttgaagacaaataagaggtcatttagaggatttttccatggtttgaggaatattttatatttttttcattcgagttatcgtaatttagtttct 24846342  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||   ||||||||||||| |||||||||    
T  24846343 tccttgttcatgcaactctacaggtgtttt 24846372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 11997966 - 11997898
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||| ||||  ||||||| ||||| ||||||| |||||||||||||||  |||||||||||    
T  11997966 ttgtattgtttttattcaggtcattgcaatttccttttatactaaatcatgcaacttcataggtgtttt 11997898  T

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Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 15697434 - 15697340
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| | ||||||  |||||| | |||||||||||||||| ||| | ||| |||| | |||||||| |||||||||| |||||||||| ||||    
T  15697434 gagttgtcgatggttagaggaactttttgtattgttttcatttgagacgttgcaattcagttttatccgaaatcatgcatctctataggtatttt 15697340  T

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Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 26330165 - 26330071
Alignment:
Q  387 agttgccaatggttttaggaacatgttgtattgttttcattcgagtca-ttgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| ||||||| | ||||| || |||||||||||||| | ||| || ||||||||  ||||||||||| |||||||||||  |||||||||||    
T  26330165 agttgtcaatggtctaaggaatatattgtattgttttcacttgagccagttgtaattcccttttatcctagatcatgcaacttcataggtgtttt 26330071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 16603682 - 16603617
Alignment:
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||| ||||||||| |||||||| | ||||| |||||||||||||| |  |||||||||||    
T  16603682 tattgttttgattcgagtcgttgtaattaaattttagcctaaatcatgcaatttcataggtgtttt 16603617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 22229826 - 22229903
Alignment:
Q  391 gccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    ||||||||||| |||||  | |||||||||||||| | ||||| |||||||| | |||||||||| | ||||||||||    
T  22229826 gccaatggtttaaggaatgtattgtattgttttcacttgagtcgttgtaattcagttttatcctagaccatgcaactc 22229903  T

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Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 467
Target Start/End: Complemental strand, 19763962 - 19763907
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    |||||||||||||||| ||| || |||| || | ||||||||||||||||||||||    
T  19763962 ttgtattgttttcatttgaggcaatgtagttcagttttatcctaaatcatgcaact 19763907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 646
Target Start/End: Original strand, 17028697 - 17028735
Alignment:
Q  608 gtggaaaaaacacagttttcttctcttaaaccctaagta 646  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  17028697 gtggaaaaaacctagttttcttctcttaaaccctaagta 17028735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 4325438 - 4325361
Alignment:
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||| ||| |||||||||||| |||||| ||||||||||||| |||  |||  ||| ||||||  |||||||||||||    
T  4325438 aggaccattttgtattgtttttattcgaatcattgtaatttaatttcttccctaattatgcaatcctataggtgtttt 4325361  T

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Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 29150985 - 29150924
Alignment:
Q  404 ggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaa 465  Q
    ||||||| ||||||| |||||| | || ||||||||||| | ||||||| ||||||||||||    
T  29150985 ggaacatcttgtattattttcacttgaatcattgtaattcatttttatcttaaatcatgcaa 29150924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 25494579 - 25494446
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttata 483  Q
    |||||||| ||||||||| |||||||| |||| ||||||||  | ||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  25494579 aggagttgtcaatggtttgaggaacatattgtcttgttttctcttgagtccttgtaatttacttttatcctaaatcatgcaactacataggtgttttgta 25494480  T
Q  484 gtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||||| |||||||||| |||||||||||||    
T  25494479 gtgagaaatcatgtaaatcgacaaatcaagacat 25494446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 303 - 480
Target Start/End: Original strand, 34381642 - 34381819
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    |||||| ||||||||||  |||||||||| |  |||||||||| ||||||||||||||||| |||||||  ||||||||| ||||||||  ||||||||     
T  34381642 atgacaaagtatcatatagtattttaggttatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttg 34381741  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    | |||||| || ||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||  |||||||||||    
T  34381742 aagaacatattatattgttttcattcgagtcgttgtaattcacttctattctaaatcacgcaacttcataggtgtttt 34381819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 355 - 517
Target Start/End: Original strand, 30675470 - 30675641
Alignment:
Q  355 catttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcct 454  Q
    |||||| ||||||||||  || || ||| |||||||| ||||||||| |||||||| |||||||||||||| ||||||| |||||||  |||||| ||||    
T  30675470 catttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcct 30675569  T
Q  455 aaatcatgcaactctatag---------gtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    | |||||||||||| ||||         ||||||||||||||||||| |||||||||||||| | |||||||    
T  30675570 atatcatgcaactccataggtgttttgagtgttttatagtgagaaatcatgtaaatcggcaatttaagacat 30675641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 303 - 524
Target Start/End: Original strand, 26657410 - 26657640
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    |||||| |||||||||||||||||| |   |  |||||||||  ||| ||||||||||||||||||||  |||  |  || |||||||| |||||||||     
T  26657410 atgacatagtatcatatgatatttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttg 26657509  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctatag---------gtgttttatagtgagaaatt 493  Q
    ||||| ||  ||||||||||||| |||| || |||||||| |||||||||||| |||| ||||||| ||||         ||||||| |||||| ||||     
T  26657510 aggaatataatgtattgttttcactcgattcgttgtaattcacttttatcctagatcacgcaactccataggtgttttgagtgttttgtagtgaaaaatc 26657609  T
Q  494 atgtaaatcggcaaatcaagacattaagtga 524  Q
    |||||||||| ||||||||||||||| ||||    
T  26657610 atgtaaatcgacaaatcaagacattaggtga 26657640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 420 - 524
Target Start/End: Complemental strand, 23519822 - 23519719
Alignment:
Q  420 ttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacatta 519  Q
    |||||| || ||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||||| |||||||||| || ||||||||||||    
T  23519822 ttttcactcaagtcattgtaattcacttttatcctagatcatgcaactctata-gtgttttgtagtgagaaatcatgtaaatcgacacatcaagacatta 23519724  T
Q  520 agtga 524  Q
     ||||    
T  23519723 cgtga 23519719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 351 - 468
Target Start/End: Original strand, 50047163 - 50047280
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  || ||  || |||||||| ||||| ||| || ||||| |||||||||||||| ||||||||| |||||| |||||||    
T  50047163 tttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcactttta 50047262  T
Q  451 tcctaaatcatgcaactc 468  Q
    ||||||||||| ||||||    
T  50047263 tcctaaatcatacaactc 50047280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 393 - 480
Target Start/End: Original strand, 26102081 - 26102168
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||| |||| ||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| || ||||||||    
T  26102081 caatggtttgaggaccattttgtattgttttcattcgagttgttgtaattcacttttatcctaaatcatgcaactccatgggtgtttt 26102168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 347 - 480
Target Start/End: Complemental strand, 15417110 - 15416977
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||| ||||||||||||||||||    | ||||| ||||||||   ||||||| || ||||| || |||||||||||||| | ||||| ||||| |||    
T  15417110 tttattcgcatttgaagacaaataagagatcatttaaaggagttgttcatggtttgagaaacattttttattgttttcattcaattcattttaattcact 15417011  T
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| |||||||||||||| ||||||||||||    
T  15417010 tttatcttaaatcatgcaactgtataggtgtttt 15416977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 31313534 - 31313663
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| |||||||    | ||||| || ||||| |||||  ||||||||| | ||||||||||||| ||| |||| |||||||| |||||||    
T  31313534 tttgcatttgaaggcaaataagagttcatttagagaagttgtcaatgtctttaggaacgttttgtattgttttcgttcaagtcgttgtaattcactttta 31313633  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||||||  |||||||||||    
T  31313634 tcctaaatcatgcaacttcataggtgtttt 31313663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 313 - 480
Target Start/End: Complemental strand, 15299040 - 15298873
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||||||||||||| |  |||||||    ||| |||||||||| || ||||| |   || ||||||| |||||| ||||||||| |||||  | |    
T  15299040 atcatatgatattttaggttatgtttttatatattttctttgcatttgcaggcaaattagaagtcatttacaagagttgtcaatggtttgaggaagtttt 15298941  T
Q  413 tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| |||||| || ||||||||||| | |||||||| |||||||||||||  |||||||||||    
T  15298940 tgtattgtattcatttgaatcattgtaattaagttttatccaaaatcatgcaacttcataggtgtttt 15298873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 390 - 480
Target Start/End: Complemental strand, 25728003 - 25727913
Alignment:
Q  390 tgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||| |||||  | |||||||||||||| || | || |||||||| ||||||||||||||||||||||||| |||||||||||    
T  25728003 tgccaatggtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgtttt 25727913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 390 - 480
Target Start/End: Complemental strand, 25736411 - 25736321
Alignment:
Q  390 tgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||| |||||  | |||||||||||||| || | || |||||||| ||||||||||||||||||||||||| |||||||||||    
T  25736411 tgccaatggtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgtttt 25736321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 8247790 - 8247661
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  | ||| ||||| |  ||||||||| |||||||| || |||| |||||| | |||||||||||||||  |||||    
T  8247790 tttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaacatattttattattttcacttgagtcattgtaattttgtttta 8247691  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
     |||| |||||||||||| |||||||||||    
T  8247690 ccctagatcatgcaactccataggtgtttt 8247661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 465
Target Start/End: Original strand, 12810337 - 12810418
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaa 465  Q
    |||||||| ||||||||| |||||||| ||||||||||||||||| |||| |||||||| | |||||||||| |||||||||    
T  12810337 aggagttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattcatttttatcctagatcatgcaa 12810418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 18795163 - 18795292
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||  ||||||   || ||||| |||| ||  ||||||||| |||||||| |||||| ||||||||| |||| |||||||||||||||||    
T  18795163 tttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgttttcatttgagtaattgtaatttactttta 18795262  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| |||| || ||  |||||||||||    
T  18795263 tcctaagtcatacagcttcataggtgtttt 18795292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 480
Target Start/End: Original strand, 23223426 - 23223523
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgtttt-cattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| ||||||||| |||||||  ||||||| |||| || |||| || |||||||||||||||||||||||||||||||||| | |||||||||    
T  23223426 aggagttgtcaatggtttgaggaacacattgtattttttttcactcgattcgttgtaatttacttttatcctaaatcatgcaactccaaaggtgtttt 23223523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 11770127 - 11770011
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||| ||||||  ||  | ||| || | ||| ||||||||| |||||||| |||||||||||||| ||| ||| |||||||| |||||||    
T  11770127 tttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcactttta 11770028  T
Q  451 tcctaaatcatgcaact 467  Q
    |||||||||||| ||||    
T  11770027 tcctaaatcatgaaact 11770011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 313 - 449
Target Start/End: Original strand, 25373730 - 25373866
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||| ||||||| ||||  | ||||||| ||| ||| ||||||||||||| |||||||||||||||||| | ||| |  ||||  ||| |||||||  |    
T  25373730 atcatgtgatattctaggctatatttttagtagttttctttgcatttgaaggcaaataaattgtaatttagaagaggtttcaattatttgaggaacaaat 25373829  T
Q  413 tgtattgttttcattcgagtcattgtaatttactttt 449  Q
    ||||||||||||||| ||||| |||||||| ||||||    
T  25373830 tgtattgttttcatttgagtcgttgtaattaactttt 25373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 356 - 479
Target Start/End: Original strand, 18391069 - 18391192
Alignment:
Q  356 atttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatccta 455  Q
    |||| |||||||||||  ||| ||||| || ||||| ||||||||| || ||||| || |||| |||||||| ||||| |||||||| ||||||||||||    
T  18391069 atttaaagacaaataagatgtcatttaaagaagttgtcaatggtttgagtaacattttatattattttcatttgagtcgttgtaattaacttttatccta 18391168  T
Q  456 aatcatgcaactctataggtgttt 479  Q
     ||||||||| || ||||| ||||    
T  18391169 gatcatgcaattccataggcgttt 18391192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 23521750 - 23521687
Alignment:
Q  454 taaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||| || ||||||||||    
T  23521750 taaatcatgcaattctataggtgttttgtagtgagaaatcatgtaaatcgacacatcaagacat 23521687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 12424004 - 12423918
Alignment:
Q  394 aatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| |||||||| |  ||||||||||| |||||||||||||||| | ||||||| || |||||||||||| ||| |||||||    
T  12424004 aatggtttgaggaacatatgatattgttttcactcgagtcattgtaattcagttttatcttagatcatgcaactccatatgtgtttt 12423918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 30781742 - 30781871
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  | ||| ||||||||   ||  |||||| || || |||||||||||||| ||||| |||||||||| | |||||    
T  30781742 tttgcatttgaagacaaataagatgagagttagaggagttgttgataattttagaaatatattgtattgttttcaatcgagacattgtaattcagtttta 30781841  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||| | ||||| |||||| |||||||||||    
T  30781842 tccaagatcatacaactccataggtgtttt 30781871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 19257899 - 19257807
Alignment:
Q  388 gttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||| ||||| ||| |||||| |  |||||||||||||||| |||||||||||||   |||||||||||||||||||| ||  ||||||||||    
T  19257899 gttgtcaatgatttgaggaactttctgtattgttttcattctagtcattgtaattcgattttatcctaaatcatgcaagtccttaggtgtttt 19257807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 393 - 473
Target Start/End: Original strand, 19884196 - 19884276
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctatag 473  Q
    ||||||||| |||||| | || |||||||||||||||| ||  |||||||  |||||||||||||||||||||||| ||||    
T  19884196 caatggtttgaggaaccttttatattgttttcattcgattcgatgtaattctcttttatcctaaatcatgcaactccatag 19884276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 27461262 - 27461186
Alignment:
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttt 479  Q
    |||||||| ||||||||||||||||| |||  || ||||| ||||||||||||||| ||||||||  ||||||||||    
T  27461262 aggaacattttgtattgttttcattcaagttgttataattcacttttatcctaaattatgcaacttcataggtgttt 27461186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 13119795 - 13119884
Alignment:
Q  12 caaaaggtaacctccatcaaggagtctgaaaatctcaacactctaggcatcaccatcttatttggaaagctcaaggaacatgagcatgaaatc 104  Q
    |||||||||||| |||| ||||  |||||| ||||||||||| |||   |||| |  |||||||||||||||||| |||||||||||||||||    
T  13119795 caaaaggtaaccaccattaaggtttctgaagatctcaacactatag---tcactactttatttggaaagctcaagtaacatgagcatgaaatc 13119884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 346 - 479
Target Start/End: Original strand, 21548625 - 21548758
Alignment:
Q  346 atttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttac 445  Q
    |||||||||||| ||||| ||||| | | ||   ||| ||||||||   ||||||| || ||| | || ||||||||||||||||||| |||||||| |     
T  21548625 atttatttgcatatgaaggcaaattagtagtccattaaaggagttgatgatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcag 21548724  T
Q  446 ttttatcctaaatcatgcaactctataggtgttt 479  Q
    ||||||||||||  ||||||||| ||| ||||||    
T  21548725 ttttatcctaaaaaatgcaactccataagtgttt 21548758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 25730704 - 25730575
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||| ||||||||  ||  | ||| ||| | || |||||| || |||| | | ||||||||||||||||| | |||||| |||| | |||||    
T  25730704 tttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgaggagcgtattgtattgttttcattcaaatcattgaaattcaatttta 25730605  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||||||  | |||||||||    
T  25730604 tcctaaatcatgcaacttcacaggtgtttt 25730575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 18301099 - 18301007
Alignment:
Q  388 gttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||| ||||||||| ||||| || ||||| ||||||| ||  |||| |||||||| |||||||||  |||||||||||||  |||||||||||    
T  18301099 gttgtcaatggtttgaggaatatattgtactgttttctttaaagtcgttgtaattgacttttatcgaaaatcatgcaacttcataggtgtttt 18301007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 21451948 - 21451820
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  |  || | |||||| ||||||| | |||||||| ||||||| |||||| |||| ||||| |||||   |||||    
T  21451948 tttgcatttgaagacaaataagatgagagatagaagagttgtcaatggtat-aggaacatattgtattattttcactcgactcattataattctgtttta 21451850  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| ||  |||||||| |||||||||||    
T  21451849 tcctagatagtgcaactccataggtgtttt 21451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 13807840 - 13807756
Alignment:
Q  396 tggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| | |||||| ||||||||||||||||| |||| |||||||| || || ||||  ||||||||||||  |||| ||||||    
T  13807840 tggtttgatgaacattttgtattgttttcattcaagtcgttgtaattcacgttcatccctaatcatgcaacttcatagttgtttt 13807756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 14136611 - 14136483
Alignment:
Q  165 ggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtttg 264  Q
    |||||||||||||||| ||  || |||||| || ||| ||  ||||  |||| ||||||| ||| |||||||||||  |||||| ||| | | ||||||     
T  14136611 ggttcaagaggatagtaacttcggtgaagattcacctagtaaagagaaaatgtggttgttcgtgggatgatacaactactatgtccaaaagaatggttta 14136512  T
Q  265 aaacataatgaataaaatttgattaactt 293  Q
    |||||||||||  ||| ||||||||||||    
T  14136511 aaacataatgacaaaattttgattaactt 14136483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 646
Target Start/End: Complemental strand, 25726348 - 25726309
Alignment:
Q  607 ggtggaaaaaacacagttttcttctcttaaaccctaagta 646  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  25726348 ggtggaaaaaactctgttttcttctcttaaaccctaagta 25726309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 646
Target Start/End: Complemental strand, 25734756 - 25734717
Alignment:
Q  607 ggtggaaaaaacacagttttcttctcttaaaccctaagta 646  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  25734756 ggtggaaaaaactctgttttcttctcttaaaccctaagta 25734717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 524
Target Start/End: Complemental strand, 26854407 - 26854271
Alignment:
Q  394 aatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagt-------g 486  Q
    |||| ||| |||||| | ||||||| ||||||||| |||| |||||||| | ||||||||||| |||| |||||  |||| ||||||  |||       |    
T  26854407 aatgttttgaggaactttttgtattcttttcattcaagtcgttgtaattcaattttatcctaattcatacaacttcatagatgtttt-gagtctttttag 26854309  T
Q  487 agaaattatgtaaatcggcaaatcaagacattaagtga 524  Q
    |||||| ||||||| ||||||| |||||||||||||||    
T  26854308 agaaatcatgtaaaccggcaaaacaagacattaagtga 26854271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 14136780 - 14136686
Alignment:
Q  25 ccatcaaggagtctgaaaatctcaacactctaggcatcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagtt 119  Q
    |||| ||||||||| ||||| |||| ||| ||  ||||||||   |||||||||||||||| || ||||| ||||||||| || |||| ||||||    
T  14136780 ccattaaggagtctcaaaatatcaatactttatacatcaccactctatttggaaagctcaatgaccatgaacatgaaatcacatggttaaaagtt 14136686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 21550979 - 21550933
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcga 430  Q
    |||||||| | ||||||| |||||||| |||||||||||||||||||    
T  21550979 aggagttgtctatggtttgaggaacattttgtattgttttcattcga 21550933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 462
Target Start/End: Original strand, 25126495 - 25126573
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatg 462  Q
    |||||||| ||||||||| || ||  | |||||||||||| ||| ||||| | |||||| | |||||||||||||||||    
T  25126495 aggagttgtcaatggtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagttttatcctaaatcatg 25126573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 25266423 - 25266377
Alignment:
Q  406 aacatgttgtattgttttcattcgagtcattgtaatttacttttatc 452  Q
    ||||| |||||||||||||| |||||||||||||||| | |||||||    
T  25266423 aacatattgtattgttttcactcgagtcattgtaattcatttttatc 25266377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 309 - 528
Target Start/End: Complemental strand, 16387423 - 16387202
Alignment:
Q  309 gagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaac 408  Q
    |||||||||||||||| ||| |  |  |||||| ||| ||| ||||  ||||||||| |||||  ||||||||| | |||||| ||||||||| |||||     
T  16387423 gagtatcatatgatatcttaagatatgtttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaat 16387324  T
Q  409 atgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatc--atgcaactctataggtgttttatagtgagaaattatgtaaatcggca 506  Q
     | |||||||||||| ||||||| | |||||||| ||  ||||| ||||||  |||||||||||||  ||||||||||| |||||| |||||||||||||    
T  16387323 ttattgtattgtttttattcgagccgttgtaattcaccgttatcttaaatctcatgcaactctataaatgttttatagtaagaaatcatgtaaatcggca 16387224  T
Q  507 aatcaagacattaagtgaggga 528  Q
    ||||||||||||| ||||||||    
T  16387223 aatcaagacattaggtgaggga 16387202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 351 - 528
Target Start/End: Original strand, 22262332 - 22262509
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||| ||| ||||||||||||   |||||||| |||||||| ||||||||| || || || ||||||| ||||||| ||||||  ||| ||| ||||||     
T  22262332 tttgtattcgaagacaaataagaagtaatttagaggagttgtcaatggtttgagaaaaatattgtattattttcatccgagtcgatgtgattcacttttg 22262431  T
Q  451 tcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacattaagtgaggga 528  Q
     ||||||| ||||||||||| ||||||||| ||||||| | | |||||||| |||||||||| |||| | ||||||||    
T  22262432 acctaaattatgcaactctaaaggtgttttgtagtgaggactcatgtaaattggcaaatcaaaacatcatgtgaggga 22262509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 351 - 481
Target Start/End: Original strand, 15574907 - 15575036
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  ||||| |||| ||| ||||| ||| ||||||||||| ||||||||||| || |||| |||||||||| |||||    
T  15574907 tttgcatttgaagacaaataagatgagatttagaggaattgtcaatg-tttgaggaacatgttatattgttttcactctagtcgttgtaatttagtttta 15575005  T
Q  451 tcctaaatcatgcaactctataggtgtttta 481  Q
     |||| |||||||||||| |||||| |||||    
T  15575006 gcctagatcatgcaactccataggtttttta 15575036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 26512910 - 26512781
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| |||||||   || ||||| |||||||| |||||||||  | ||||| ||||||||||||||||||| || |||||||| |||||||    
T  26512910 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcactttta 26512811  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
     |||| |||||||||| | |||| ||||||    
T  26512810 acctagatcatgcaacccgatagctgtttt 26512781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 26518026 - 26517897
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| |||||||   || ||||| |||||||| |||||||||  | ||||| ||||||||||||||||||| || |||||||| |||||||    
T  26518026 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcactttta 26517927  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
     |||| |||||||||| | |||| ||||||    
T  26517926 acctagatcatgcaacccgatagctgtttt 26517897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 393 - 468
Target Start/End: Complemental strand, 17860539 - 17860464
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    ||||||||| |||||||| ||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  17860539 caatggtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactc 17860464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 14924550 - 14924421
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| |||||||  ||||||||| |||||||| ||||||||| |||||||  || |||  | |||||||||||| |||||  | |||||||    
T  14924550 tttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaacaatttatatcttattcattcgagtcgttgtacctcactttta 14924451  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    | ||||||||||||| | |||||| |||||    
T  14924450 ttctaaatcatgcaattatataggggtttt 14924421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 347 - 470
Target Start/End: Complemental strand, 13759588 - 13759465
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||| ||||||||| ||||||  ||  | ||| |||||||| ||||||||| |||||||| ||| |||||||||| |||| || |||||||| | |    
T  13759588 tttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattcaat 13759489  T
Q  447 tttatcctaaatcatgcaactcta 470  Q
    ||||| ||| ||||||||||||||    
T  13759488 tttattctatatcatgcaactcta 13759465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 301 - 515
Target Start/End: Original strand, 30355258 - 30355471
Alignment:
Q  301 ttatgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtt 400  Q
    ||||||| ||| ||||||||||||||| ||  |  |||||| ||  |||| ||||||||||||  ||||||  ||  | ||| || ||||| ||||||||    
T  30355258 ttatgacggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtt 30355357  T
Q  401 ttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaa 500  Q
    | |  ||||| ||||||| |||||| || |||| || ||||| ||||||||| |||||||||||||| |||||||||||| |||| || | | | |||||    
T  30355358 tgataaacatattgtatt-ttttcactcaagtcgttttaattcacttttatcataaatcatgcaactttataggtgttttgtagtaaggattcacgtaaa 30355456  T
Q  501 tcggcaaatcaagac 515  Q
    ||| |||| ||||||    
T  30355457 tcgacaaaccaagac 30355471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 359 - 480
Target Start/End: Complemental strand, 9943274 - 9943153
Alignment:
Q  359 tgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaat 458  Q
    |||||||||||||   || ||||| |||||||| | || |||| ||||| || |||||| ||| |||||| ||   |||||||| |||||||||||||||    
T  9943274 tgaagacaaataagaggtcatttagaggagttgtccatcgtttgaggaatattttgtatagttatcattcaagctgttgtaattcacttttatcctaaat 9943175  T
Q  459 catgcaactctataggtgtttt 480  Q
    |||||||||| |||||||||||    
T  9943174 catgcaactccataggtgtttt 9943153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 492
Target Start/End: Original strand, 16527878 - 16528013
Alignment:
Q  357 tttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaa 456  Q
    |||||||||||||||  ||  | ||| |||||||| |  |||||| || | ||| || ||||||||||| ||||||| |||||||| | ||||||||||     
T  16527878 tttgaagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattgttttcactcgagtcgttgtaattcatttttatcctag 16527977  T
Q  457 atcatgcaactctataggtgttttatagtgagaaat 492  Q
    |||||||||||  ||||||||||| ||| |||||||    
T  16527978 atcatgcaacttcataggtgttttgtagggagaaat 16528013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 465
Target Start/End: Complemental strand, 32930605 - 32930491
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| |||||||  ||| ||||| |||||||| |||||||||  ||||||| |||| |||||| |||  ||||| || ||||| |||||||    
T  32930605 tttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgttttgtttccataagagtcgttttaattcactttta 32930506  T
Q  451 tcctaaatcatgcaa 465  Q
    |||| || |||||||    
T  32930505 tccttaaacatgcaa 32930491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 12972517 - 12972388
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| ||| |||   || ||||| |||||||| ||||| |||  |||| || |||||||| |||||||| || | |||||||| | || ||    
T  12972517 tttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatgttttacggaaaattttgtattgctttcattcaagacgttgtaattcagttgta 12972418  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||||||  ||| |||||||    
T  12972417 tcctaaatcatgcaacttcatacgtgtttt 12972388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 14768368 - 14768287
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaa 465  Q
    |||||||| || |||||| |||||  | |||||||| |||||||||||| ||||||||| || ||||| ||||| |||||||    
T  14768368 aggagttgtcattggtttgaggaattttttgtattggtttcattcgagttattgtaattcacatttattctaaaacatgcaa 14768287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 480
Target Start/End: Complemental strand, 1755656 - 1755565
Alignment:
Q  389 ttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| ||||||| |||| ||| |||||||||||||||| || || |||||||| |||| |||||  ||||||| ||||  ||| |||||||    
T  1755656 ttgcccatggtttgaggatcattttgtattgttttcatttgattcgttgtaattcacttgtatccctaatcatgtaactacatacgtgtttt 1755565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 9396732 - 9396656
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcatt 427  Q
    |||||||||||||  ||||||   || ||||| ||||||   |||||||| ||||||||| ||||||||||||||||    
T  9396732 tttgcatttgaaggaaaataagaggtcatttagaggagtaatcaatggttataggaacatcttgtattgttttcatt 9396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 303 - 480
Target Start/End: Complemental strand, 8402731 - 8402554
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagattta-tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 401  Q
    ||||||||| |||||||||||||||||   |  |||||||   ||||| ||||||||||||| |||||||  ||||||||| |||||||| |||||||||    
T  8402731 atgacagagcatcatatgatattttagactatgtttttatgt-atttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggttt 8402633  T
Q  402 taggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
     |||||||  |||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||| |||||||||||    
T  8402632 gaggaacaatttgtattgttttcattcgagtcgttgtaattcatttttatcttaaatcatgcaactccataggtgtttt 8402554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 313 - 514
Target Start/End: Complemental strand, 25919635 - 25919432
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||||||||  ||| |  |||||| || |||| |||| ||||||||||||||||  ||  | ||| | || ||| ||||||||| |||||||| |    
T  25919635 atcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaacatat 25919536  T
Q  413 --tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatc 510  Q
      ||| ||||||| | | ||||||| |||||| ||||||||||||||||||||||||| |||| |||||| ||||||| ||| |||||||||| |||| |    
T  25919535 attgtgttgtttttacttgagtcatcgtaattcacttttatcctaaatcatgcaactccatagatgttttgtagtgaggaatcatgtaaatcgacaaacc 25919436  T
Q  511 aaga 514  Q
    ||||    
T  25919435 aaga 25919432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 312 - 467
Target Start/End: Complemental strand, 21829304 - 21829149
Alignment:
Q  312 tatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatg 411  Q
    |||||||||||||||| |   | |||||||||   |||||||||||||||||  ||||||   || ||||| |||||||| ||||||||| ||||||||     
T  21829304 tatcatatgatatttttgactatatttttatttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacatt 21829205  T
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    ||||||| |||||||| ||||| |||||||| | |||||||||||||||| |||||    
T  21829204 ttgtattattttcatttgagtcgttgtaattcagttttatcctaaatcatacaact 21829149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 412 - 517
Target Start/End: Complemental strand, 5632605 - 5632500
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatca 511  Q
    |||| ||||||||||| || || |||||||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||| |||||||||| |||| ||    
T  5632605 ttgtgttgttttcatttgattcgttgtaattcacttttatcttgaatcatgcaactccataggtgttttgtagtgagaaatcatgtaaatcgacaaacca 5632506  T
Q  512 agacat 517  Q
    ||||||    
T  5632505 agacat 5632500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 353 - 524
Target Start/End: Original strand, 10341780 - 10341950
Alignment:
Q  353 tgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatc 452  Q
    ||||||||||  |||||||  ||| | ||| |||||||| ||||||||  |||||||  |||||||||||||| |  |||| |||||||| ||||||||     
T  10341780 tgcatttgaaatcaaataagatgtgaattagaggagttgtcaatggttg-aggaacaaattgtattgttttcactaaagtcgttgtaattcacttttatt 10341878  T
Q  453 ctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacattaagtga 524  Q
    | |||||||||||||| ||||||||||| | ||||||||| |||||||||  |||||| | |||| ||||||    
T  10341879 caaaatcatgcaactccataggtgttttgttgtgagaaatcatgtaaatcaacaaatccaaacatcaagtga 10341950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 351 - 517
Target Start/End: Complemental strand, 33914695 - 33914525
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||| |||||||||||  ||  | ||| |||||||| ||| ||||| |||||||| |||||||||||| | ||||||| |||||||| ||  |||    
T  33914695 tttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgtttttactcgagtcgttgtaattcac-gtta 33914597  T
Q  451 tcctaaatcatgcaactcta-----taggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||| ||||||||||||||||     |  ||||||| ||||||||||| |||||||||| | |||||||||||    
T  33914596 tcccaaatcatgcaactctatgttttgagtgttttgtagtgagaaatcatgtaaatcgacgaatcaagacat 33914525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 524
Target Start/End: Original strand, 26297764 - 26297910
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt------ 477  Q
    ||||||||  |||||||| || ||| | || ||||||||||||||||||| |||||||| | ||||||||||||||||||||||  ||| ||||          
T  26297764 aggagttgttaatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttgagtc 26297863  T
Q  478 tttatagtgagaaattatgtaaatcggcaaatcaagacattaagtga 524  Q
    | | |||||| |||| ||||||||||||||| |||||||| ||||||    
T  26297864 tatttagtgataaatcatgtaaatcggcaaaacaagacatcaagtga 26297910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 13911282 - 13911376
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| ||||||||| |||||||| | |||||||||||| | || ||||||||||| |||||||||||| |||||||||||  ||| |||||||    
T  13911282 gagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgtgtttt 13911376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 393 - 517
Target Start/End: Original strand, 11474870 - 11475003
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtg---------ttttata 483  Q
    ||||||||| |||||| | ||||||| ||||||||||| || |||||||| | ||||||||||||||||||||||  ||| |||         |||| ||    
T  11474870 caatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtctttttta 11474969  T
Q  484 gtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||||| ||||||||||||||| ||||||||    
T  11474970 gtgagaaatcatgtaaatcggcaaaacaagacat 11475003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 385 - 517
Target Start/End: Original strand, 18065832 - 18065953
Alignment:
Q  385 ggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatag 484  Q
    ||||||| ||||||||| || ||||| |||||||||||||| |||||||   |||||| |||||||||||||||||        |||||||||||| |||    
T  18065832 ggagttgtcaatggtttgagaaacatattgtattgttttcactcgagtc---gtaattcacttttatcctaaatca--------tataggtgttttgtag 18065920  T
Q  485 tgagaaattatgtaaatcggcaaatcaagacat 517  Q
    | |||||| |||||||| | |||||||||||||    
T  18065921 taagaaatcatgtaaatagacaaatcaagacat 18065953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 480
Target Start/End: Complemental strand, 2729718 - 2729622
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| ||||||||  |||||||| || ||||||||||| ||||||| |||||||| | |||||||||||| |||||||||  ||| |||||||    
T  2729718 aggagttgtcaatggttcaaggaacatattatattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgtttt 2729622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 18474214 - 18474281
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  18474214 ttgtattgttt-cattcgattcattgtaattcactgttatcctaaatcatgcaactccataggtgtttt 18474281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 28422496 - 28422563
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| || ||||||||    
T  28422496 ttgtattgttttcattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgtttt 28422563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 30493336 - 30493268
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||||||||||| || || ||||||||    
T  30493336 ttgtattgttttcattcgagtcgttgtagtttagttttatcctaaatcatgcaaatccatgggtgtttt 30493268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 23007163 - 23007069
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| ||||| ||| ||||| || |||||||||||||  |||||||||| ||| | |||||||||||||||||| |||||| |||| ||||||    
T  23007163 gagttgtcaatgatttgaggaatatattgtattgttttccctcgagtcattataaatcacttttatcctaaatcatacaactccatagatgtttt 23007069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 393 - 467
Target Start/End: Complemental strand, 27374542 - 27374468
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    ||||||||| |||||  | ||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||    
T  27374542 caatggtttaaggaagtttttgtattgttttcattcgagtcattataatccagttttatcctaaatcatgcaact 27374468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 21017859 - 21017988
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||| ||||||  ||  | ||| |||||||| ||||  ||| |||||||| || |||| ||||||  |||||| |||||||| | |||||    
T  21017859 tttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattattttcaaccgagtcgttgtaattcagtttta 21017958  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||||||||||| | |||||||    
T  21017959 tcctagatcatgcaactctaaatgtgtttt 21017988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 26387977 - 26387848
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| ||||| |   |||| ||| || ||||| ||||||||| || ||| | ||||||| |||||||| | ||| | |||||| | |||||    
T  26387977 tttgcatttgaaggcaaattagaagtaaattagagtagttgtcaatggtttgagaaacgttttgtattcttttcatttgtgtcgtagtaattaagtttta 26387878  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||||||| |||| ||||||    
T  26387877 tcctaaatcatgcaactccatagatgtttt 26387848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 397 - 480
Target Start/End: Original strand, 27415199 - 27415279
Alignment:
Q  397 ggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||||| |||||||||||||| |||||||   |||||| ||||||||| ||||||||||||||  |||||||||||    
T  27415199 ggtttaaggaacatattgtattgttttcactcgagtc---gtaattcacttttatcgtaaatcatgcaacttcataggtgtttt 27415279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 480
Target Start/End: Complemental strand, 19546074 - 19545987
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||| |||||| | |||||||||||| ||| |||||||||||||| ||| |||||||| |||||| || | ||||| ||||||    
T  19546074 caatggtttgaggaacttattgtattgtttttatttgagtcattgtaattcactattatcctatatcatgtaattttatagttgtttt 19545987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 468
Target Start/End: Complemental strand, 1475413 - 1475296
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| | |||||  ||  | ||| |||||||  ||||||||| ||||| || ||||||| |||||| ||||||| |||||||| | || ||    
T  1475413 tttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttgaggaatatattgtattattttcactcgagtcgttgtaattcaattata 1475314  T
Q  451 tcctaaatcatgcaactc 468  Q
    ||||| ||||||||||||    
T  1475313 tcctagatcatgcaactc 1475296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 513
Target Start/End: Complemental strand, 19263998 - 19263869
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttata 483  Q
    |||||||| ||||||||| |||| ||| || ||||||| ||| | ||||| |||||||| ||||||||||||||||| |   ||  ||| ||||||| ||    
T  19263998 aggagttgtcaatggtttgaggatcatattatattgttgtcactagagtcgttgtaattcacttttatcctaaatcaggatgctgcataagtgttttgta 19263899  T
Q  484 gtgagaaattatgtaaatcggcaaatcaag 513  Q
    || || ||| ||| |||||| |||||||||    
T  19263898 gtaaggaatcatggaaatcgtcaaatcaag 19263869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 468
Target Start/End: Original strand, 25188740 - 25188856
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||   || ||||| |||| ||| |||||||||  ||||  | ||  ||| || |||||||| ||||||||||| |||||||    
T  25188740 tttgcatttgaagacaaataagaggtcatttagaggaattgacaatggtttgtggaatgttttaaatt-ttctcattcgaatcattgtaattcactttta 25188838  T
Q  451 tcctaaatcatgcaactc 468  Q
    || |||||||||||||||    
T  25188839 tcataaatcatgcaactc 25188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 23908351 - 23908289
Alignment:
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaa 465  Q
    |||||||| ||||||||||||||||||| || ||||||||  ||||||||| |||| ||||||    
T  23908351 aggaacattttgtattgttttcattcgattcgttgtaattcccttttatccaaaataatgcaa 23908289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 25883120 - 25883214
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| ||||  ||| |||||||| || ||||||||||| |||| || |||||||| | |||||||||| || ||||||||  |||||||||||    
T  25883120 gagttgtcaattttttgaggaacatattatattgttttcactcgaatcgttgtaattcagttttatcctagattatgcaactacataggtgtttt 25883214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 19219310 - 19219229
Alignment:
Q  385 ggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaac 466  Q
    ||||||| ||||||||| |||| ||| || ||||  ||||| | ||||| |||||||| |||||||||| ||||||||||||    
T  19219310 ggagttgtcaatggtttgaggagcatattttattactttcactagagtcgttgtaattcacttttatccaaaatcatgcaac 19219229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 33577758 - 33577831
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaac 466  Q
    ||||||||| | |||| | |||||||||||| ||| || ||||||||||| | || ||||||||||||||||||    
T  33577758 caatggtttgaagaacgttttgtattgtttttatttgattcattgtaattcatttatatcctaaatcatgcaac 33577831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 646
Target Start/End: Original strand, 10342184 - 10342224
Alignment:
Q  606 cggtggaaaaaacacagttttcttctcttaaaccctaagta 646  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  10342184 cggtggaaaaaacttagttttcttctcttaaaccctaagta 10342224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 467
Target Start/End: Original strand, 12409436 - 12409556
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||| ||||||||| |||||| |||  |  || | |||||| ||||||||| | |||||| ||||||| |||||| | ||||| |||||||| | |    
T  12409436 tttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaacatattgtattattttcacttgagtcgttgtaattcatt 12409535  T
Q  447 tttatcctaaatcatgcaact 467  Q
    |||||| |  |||||||||||    
T  12409536 tttatcttggatcatgcaact 12409556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 19285142 - 19285209
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttt 479  Q
    ||||||| |||||||||||||| |||||||| | |||| |||||||||  |||||||  |||||||||    
T  19285142 ttgtattattttcattcgagtcgttgtaattcaattttgtcctaaatccagcaactccttaggtgttt 19285209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 26797311 - 26797252
Alignment:
Q  420 ttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttt 479  Q
    |||||||||||||| || |||||   ||||||||||||||||||||||  ||||||||||    
T  26797311 ttttcattcgagtcgttataattctgttttatcctaaatcatgcaacttcataggtgttt 26797252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 467
Target Start/End: Complemental strand, 4780776 - 4780704
Alignment:
Q  394 aatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    |||||||| |||| ||| |||||||||||||| | || ||||||||||| ||| |||||||| ||||| |||||    
T  4780776 aatggtttgagga-catattgtattgttttcacttgaatcattgtaattcactcttatcctacatcattcaact 4780704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 464
Target Start/End: Original strand, 12573272 - 12573385
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||| ||||||||||||  ||  | ||| | || ||| ||||||||| |||||    |||||||||||||| ||||| | |||||||| | |||||    
T  12573272 tttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaatgctttgtattgttttcactcgagacgttgtaattcattttta 12573371  T
Q  451 tcctaaatcatgca 464  Q
    ||||| ||||||||    
T  12573372 tcctagatcatgca 12573385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 464
Target Start/End: Original strand, 13549736 - 13549849
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||| ||||||||||||  ||  | ||| | || ||| ||||||||| |||||    |||||||||||||| ||||| | |||||||| | |||||    
T  13549736 tttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaatgctttgtattgttttcactcgagacgttgtaattcattttta 13549835  T
Q  451 tcctaaatcatgca 464  Q
    ||||| ||||||||    
T  13549836 tcctagatcatgca 13549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 351 - 487
Target Start/End: Original strand, 12956471 - 12956607
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||| ||||||  ||  | ||| |||||||| ||||||||| ||||| || |||||||||||||| ||||||||| |||||| |||||||    
T  12956471 tttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcgagtcatcgtaattcactttta 12956570  T
Q  451 tcctaaatcatgcaactctataggtgttttatagtga 487  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  12956571 tcctaaatcatgtaactctataggtgttttgtagtga 12956607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 351 - 517
Target Start/End: Complemental strand, 14977240 - 14977067
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgtttt-cattcgagtcattgtaatttactttt 449  Q
    ||||||||| |||||||||||  ||  | ||| |||||||| ||||||||| |||||||| |||||||||||| || |||||||||||||||| ||||||    
T  14977240 tttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattcactttt 14977141  T
Q  450 atcctaaatcatgcaactc----tataggtgttttatagt--gagaaattatgtaaatcggcaaatcaagacat 517  Q
    |||||||||||||||||||    |||||||||||| ||||  ||||| | |||||||| | |||||||||||||    
T  14977140 atcctaaatcatgcaactccatatataggtgttttgtagtgggagaagtcatgtaaattgacaaatcaagacat 14977067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 351 - 517
Target Start/End: Complemental strand, 28901473 - 28901307
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||| |||||||| |||  |  || |||||||| ||||||||| |||||||| |||||||||||||| ||||||| ||||||||   |||||    
T  28901473 tttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcgttttta 28901374  T
Q  451 tcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||| || |||||||||  ||| |||||| |||||| |||| ||||| |||| |||||||||||||    
T  28901373 tcctagataatgcaactccttagatgttttgtagtgataaataatgtacatcgacaaatcaagacat 28901307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 480
Target Start/End: Original strand, 31436419 - 31436590
Alignment:
Q  309 gagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaac 408  Q
    ||||||||||||||||||||    | ||||||| |   ||||| ||||||||||| |||||||  ||||||||| |||||||| ||||| ||| |||||     
T  31436419 gagtatcatatgatattttatactatatttttagttattttatctgcatttgaaggcaaataagatgtaatttagaggagttgtcaatgatttgaggaat 31436518  T
Q  409 atgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |   | |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||    
T  31436519 aaactatatttttttcattcgagtcagtgtaatttagttttatcctaaatcatgcaactacataggtgtttt 31436590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 313 - 516
Target Start/End: Complemental strand, 14424983 - 14424772
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||||||||||| | || |||||| | | ||| || | ||||||||  |||| |   |||||||| || ||| | ||||||||| |||||| | |    
T  14424983 atcatatgatattttagattaagtttttagttgttttcttggaatttgaaggaaaattagaagtaatttagagaagtagtcaatggtttgaggaactttt 14424884  T
Q  413 tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttta--------tagtgagaaattatgtaaatcgg 504  Q
    | ||| ||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||        ||||||||||| |||||||||||    
T  14424883 tatatggttttcattcgagtcgttgtaattcagttttatcctaaatcatgcaactccataggtgttttaggtttttttagtgagaaatcatgtaaatcgg 14424784  T
Q  505 caaatcaagaca 516  Q
    |||| |||||||    
T  14424783 caaaacaagaca 14424772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 360 - 480
Target Start/End: Original strand, 26882399 - 26882519
Alignment:
Q  360 gaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatc 459  Q
    ||||||||||||| ||  ||||| |||||||||||||||||| |||| |||  ||||||||||||| |||||||||  |||| || |||||||||| |||    
T  26882399 gaagacaaataaaatgagatttaaaggagttgccaatggtttaaggagcataatgtattgttttcactcgagtcatcataatatagttttatcctagatc 26882498  T
Q  460 atgcaactctataggtgtttt 480  Q
    ||||||||| |||||||||||    
T  26882499 atgcaactccataggtgtttt 26882519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 27097907 - 27097758
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtg- 476  Q
    ||||| |||| ||| ||||||||| |||||||||||| |||||||||||| ||||| |||||||| | ||||||| ||||||||||||||  |||||||     
T  27097907 atttagaggaattgtcaatggtttgaggaacatgttgcattgttttcatttgagtcgttgtaattcagttttatcataaatcatgcaacttcataggtgt 27097808  T
Q  477 ---------ttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
             |||| ||||||||||| ||||||||||||||| ||||||||    
T  27097807 ttaaagtctttttttagtgagaaatcatgtaaatcggcaaaacaagacat 27097758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 303 - 480
Target Start/End: Complemental strand, 16052458 - 16052281
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    ||||| ||| ||||||||||||||| ||  |  |||||| ||  ||||||||||||||| |||||||||| ||  | ||| |||||||| |||||||||     
T  16052458 atgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttg 16052359  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |  ||||| || || |||||||| ||||||| || ||||| || |||| | ||||||||||||||| |||||||||||    
T  16052358 aataacatattttaatgttttcactcgagtcgttataattcacatttaccttaaatcatgcaactcaataggtgtttt 16052281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 351 - 468
Target Start/End: Complemental strand, 35135555 - 35135438
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||| ||||||||  |||||||  || ||| | |||||||| ||| ||||||||| |||| |||||||||||| | |||||||||||||||| | |||||    
T  35135555 tttgtatttgaaggtaaataaaaagtcattcaaaggagttgtcaaaggttttaggtacattttgtattgtttttactcgagtcattgtaattcattttta 35135456  T
Q  451 tcctaaatcatgcaactc 468  Q
    ||||||||||||||||||    
T  35135455 tcctaaatcatgcaactc 35135438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 24584796 - 24584728
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||    
T  24584796 ttgtattgttttcattcgagtcattgtaattcatttttatcataaatcatgcaactctataggtatttt 24584728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 5153767 - 5153869
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt 477  Q
    ||||| |||||||| ||||| |||||| || |  ||||||| ||||||||||||||||||||||| | ||||||| |||||||| |||||| ||||||||    
T  5153767 atttagaggagttgtcaatgattttagaaaaaatttgtattattttcattcgagtcattgtaattcagttttatcttaaatcattcaactcgataggtgt 5153866  T
Q  478 ttt 480  Q
    |||    
T  5153867 ttt 5153869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 5570274 - 5570145
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||| ||||||  ||  ||||  |||||||| ||||  ||| |||||||| |||||||||||||| ||||||  |||||||| |||||||    
T  5570274 tttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtattgttttcactcgagttgttgtaattcactttta 5570175  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||||||||   ||||||||||    
T  5570174 tcctatatcatgcaacttcgtaggtgtttt 5570145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 13082070 - 13081941
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||| ||| || |||| |||||| |||||||| ||||||  |||||||| | || ||    
T  13082070 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaacacgttgtagtgttttcactcgagtagttgtaattcagttgta 13081971  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||||||||  |||||||||||    
T  13081970 tcctagatcatgcaacttcataggtgtttt 13081941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 16054276 - 16054405
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||||||||||  |   | ||| |||||||| ||||| ||| |||||||| |||||||||||||| ||||||  |||||||| | |||||    
T  16054276 tttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaacattttgtattgttttcactcgagttgttgtaattcattttta 16054375  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| |||||  ||||| |||| ||||||    
T  16054376 tcctagatcataaaactccatagatgtttt 16054405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 30543745 - 30543872
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||||||||| ||  || | ||| |||||||  ||||| ||| | |||| | |||||||||||||||| ||||  |||||||| |||||||    
T  30543745 tttgcatttgaagacaaattaaaagttaattagaggagttctcaatg-tttgatgaactt-ttgtattgttttcatttgagttgttgtaattcactttta 30543842  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||||||||| | ||||||||||||    
T  30543843 tcctaaatcatgcaattatataggtgtttt 30543872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 517
Target Start/End: Original strand, 24120213 - 24120380
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgtttt-cattcgagtcattgtaatttactttt 449  Q
    |||||||||||||| ||||||  ||  | ||| |||||||| ||| ||||| ||||| || ||||||| |||| ||  | | || ||||| || ||||||    
T  24120213 tttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatatattgtattttttttcacccaattcgttgtagttaactttt 24120312  T
Q  450 atcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||||| ||||||||| || ||||||||||| |||| ||| ||| |||||| | |||||||||||    
T  24120313 atcctaaataatgcaactccattggtgttttataatgaggaatcatgcaaatcgaccaatcaagacat 24120380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 28074557 - 28074623
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttt 479  Q
    |||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||| ||||||||||    
T  28074557 ttgtattgttttcatt-gagtcgttgcaattcacttttatcctaaatcatgcaactccataggtgttt 28074623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 468
Target Start/End: Original strand, 10866997 - 10867087
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    ||||| || ||||| ||||||||| ||||| || |||||||||||||||| ||||| |||||||| | |||||||  ||||||||||||||    
T  10866997 atttagagtagttgtcaatggtttgaggaatattttgtattgttttcatttgagtcgttgtaattcagttttatctcaaatcatgcaactc 10867087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 28902114 - 28902200
Alignment:
Q  394 aatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| || ||||| |||||||||||||||||||||| |||||||| |||||||||||| | || |||| || ||| |||||||    
T  28902114 aatggtttgagaaacatattgtattgttttcattcgagtcgttgtaattcacttttatcctataccacgcaaatccataagtgtttt 28902200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 468
Target Start/End: Complemental strand, 6888322 - 6888206
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||| ||||||||  |||||||  || ||||| | |||||| ||||||||  || ||||| ||||||| |||||||| |||||||||||||| | || ||    
T  6888322 tttgtatttgaaggtaaataaaaggtcatttagacgagttgtcaatggttagagaaacattttgtatt-ttttcatttgagtcattgtaattcagttcta 6888224  T
Q  451 tcctaaatcatgcaactc 468  Q
    ||||||||||||||||||    
T  6888223 tcctaaatcatgcaactc 6888206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 384 - 468
Target Start/End: Original strand, 32239302 - 32239386
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    |||||||| ||||||||| || ||||| |||||||||||| | | ||||| ||| |||| ||||||||| |||||||||||||||    
T  32239302 aggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatcttaaatcatgcaactc 32239386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 480
Target Start/End: Complemental strand, 12774934 - 12774847
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||| | | |||| || |||| |||| ||| |||||||||||||||| ||||||||||||||||||||  | |||||||||||    
T  12774934 caatggtttgacgtacattttatattatttttatttgagtcattgtaatttagttttatcctaaatcatgcaataccataggtgtttt 12774847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 30851168 - 30851103
Alignment:
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||| ||||||||||| || |||||||| |  |||||||||||||||||||||| |||||||||||    
T  30851168 tattattttcattcgaatcgttgtaattcagatttatcctaaatcatgcaactcaataggtgtttt 30851103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 28260369 - 28260293
Alignment:
Q  404 ggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||| ||||||| ||||||||  |||| ||||||||||  ||||||||||||||||  |||| |||||||||||    
T  28260369 ggaacattttgtattattttcattttagtcgttgtaatttaggtttatcctaaatcatgagactccataggtgtttt 28260293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 13530238 - 13530147
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatt 442  Q
    |||||| ||||||||||||||   || ||||| ||||| || | ||||||| |||||||| ||||||||||||||||| |||| ||| ||||    
T  13530238 tttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgttttcattcaagtctttgaaatt 13530147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 13619777 - 13619686
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatt 442  Q
    |||||| ||||||||||||||   || ||||| ||||| || | ||||||| |||||||| ||||||||||||||||| |||| ||| ||||    
T  13619777 tttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgttttcattcaagtctttgaaatt 13619686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 642
Target Start/End: Complemental strand, 16051988 - 16051949
Alignment:
Q  603 gatcggtggaaaaaacacagttttcttctcttaaacccta 642  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  16051988 gatcggtggaaaaaacttagttttcttctcttaaacccta 16051949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 468
Target Start/End: Complemental strand, 29047449 - 29047335
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||| ||||||||  ||  | ||| |||||||| |||||||   |||||||  |||||||||||||| |||||||| ||||||| | |||||    
T  29047449 tttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt---aggaacacattgtattgttttcactcgagtcactgtaattcaatttta 29047353  T
Q  451 tcctaaatcatgcaactc 468  Q
    |  |  ||||||||||||    
T  29047352 taatggatcatgcaactc 29047335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 11437540 - 11437582
Alignment:
Q  482 tagtgagaaattatgtaaatcggcaaatcaagacattaagtga 524  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||    
T  11437540 tagtgagaaatcatgtaaatcggcaaaacaagacatcaagtga 11437582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 13583578 - 13583532
Alignment:
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcat 461  Q
    ||||||||| ||||||||| |||||||| | ||||||||||||||||    
T  13583578 tattgtttttattcgagtctttgtaattcagttttatcctaaatcat 13583532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 31232134 - 31232167
Alignment:
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||||||||||| |||||||||||    
T  31232134 tttatcctaaatcatgcaactccataggtgtttt 31232167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 6358676 - 6358760
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgag 431  Q
    |||||||||||||||||||| |||| |||  |  || ||||||||  ||||||||  | ||||| |||||||||||||| |||||    
T  6358676 tttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgtattgttttcaatcgag 6358760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 29291821 - 29291873
Alignment:
Q  420 ttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctata 472  Q
    |||||||| ||||| |||||||  | |||||||||||||||||||||| ||||    
T  29291821 ttttcatttgagtcgttgtaatgcagttttatcctaaatcatgcaactttata 29291873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 4500436 - 4500536
Alignment:
Q  25 ccatcaaggagtctgaaaatctcaacactctaggcatcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagttggtga 124  Q
    ||||||||||||||  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  4500436 ccatcaaggagtctcgaaatctcaacactctagacatcaccgtcttatttggaaagctcaaggaacatgagcatgaaatgacaaggttgaaagttagtga 4500535  T
Q  125 g 125  Q
    |    
T  4500536 g 4500536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 347 - 480
Target Start/End: Complemental strand, 22067943 - 22067810
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||||||||||||||||||||  ||  | ||| |||||||| ||||||||| ||||||||  ||||||||||||| |||||||||||||||| | |    
T  22067943 tttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaat 22067844  T
Q  447 tttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||| |||||||||||| |||||| ||||    
T  22067843 tttatcctagatcatgcaactccataggtatttt 22067810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 357 - 480
Target Start/End: Complemental strand, 1255340 - 1255217
Alignment:
Q  357 tttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaa 456  Q
    ||||||||||||||| |||  | ||| |||||||| ||||||||| ||||| |  |||||||||||||| |||||||||||||||| | |||||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaa 1255241  T
Q  457 atcatgcaactctataggtgtttt 480  Q
    |||||||||||  |||||||||||    
T  1255240 atcatgcaacttcataggtgtttt 1255217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 303 - 517
Target Start/End: Original strand, 7142032 - 7142255
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    ||||||||| ||||||||| ||||| ||  |  |||||| ||| ||| ||||||||| ||||||||||| |||  |   | | |||||| |||||||||     
T  7142032 atgacagagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggttta 7142131  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttta---------tagtgagaaatt 493  Q
    |||||||| || ||||| ||||| ||||||| |||||||| |||||||||| | |||||||||||| ||||||||||||         |||||||||||     
T  7142132 aggaacatattttattgctttcactcgagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgttttgtagtgagaaatc 7142231  T
Q  494 atgtaaatcggcaaatcaagacat 517  Q
    |||||||||| |||||||||||||    
T  7142232 atgtaaatcgacaaatcaagacat 7142255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 348 - 480
Target Start/End: Complemental strand, 17881634 - 17881502
Alignment:
Q  348 ttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactt 447  Q
    |||||||||||||||| ||||| |   || ||||| |||||||| ||||| |||||||||| | ||||||| ||||||||||| ||||||||||||| ||    
T  17881634 ttatttgcatttgaaggcaaattagaagtcatttaaaggagttgtcaatgattttaggaactttttgtattattttcattcgaatcattgtaatttaatt 17881535  T
Q  448 ttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| ||||||||||||||  |||||| ||||    
T  17881534 ttatcataaatcatgcaacttaataggtatttt 17881502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 313 - 480
Target Start/End: Original strand, 29544463 - 29544630
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||||||||| ||  |  |||||||||  ||| |||||||||||||||||||||  ||  | ||| |||||||| |||| |||| |||||||| |    
T  29544463 atcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatat 29544562  T
Q  413 tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||||||| ||||||| |||||||| |||||| ||||||||  ||||| || ||| |||||||    
T  29544563 tgtattgttttcactcgagtcgttgtaattcacttttctcctaaattgtgcaattccataagtgtttt 29544630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 315 - 480
Target Start/End: Original strand, 18496511 - 18496676
Alignment:
Q  315 catatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttg 414  Q
    ||||||||||||||||  |  |||||| ||| ||| |||||||||||||  ||| || ||| |||||| || ||||| |||| |||| ||||||   |||    
T  18496511 catatgatattttaggctatgtttttagtagttttctttgcatttgaaggaaaacaagttgcaatttagagaagttgtcaattgtttgaggaactatttg 18496610  T
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
     ||||||||||||||| ||||||||||| | |||||||||||||||||| |||  |||||||||||    
T  18496611 aattgttttcattcgaatcattgtaattcatttttatcctaaatcatgcgacttcataggtgtttt 18496676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 355 - 480
Target Start/End: Original strand, 23124886 - 23125011
Alignment:
Q  355 catttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcct 454  Q
    |||||||||||||||||  ||  ||||| ||||||||  | |||| | |||||||| |||||||||||||| ||||||| |||||||| || |||||||     
T  23124886 catttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattgttttcactcgagtcgttgtaattcacatttatcca 23124985  T
Q  455 aaatcatgcaactctataggtgtttt 480  Q
    ||||||| ||||||||||||||||||    
T  23124986 aaatcatacaactctataggtgtttt 23125011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 373 - 480
Target Start/End: Original strand, 1074456 - 1074563
Alignment:
Q  373 ttgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctata 472  Q
    |||||||||| |||||||| ||||||||| ||||||   ||||||| ||||||||||| |||||||||||| |||||||||||||| || |||||| |||    
T  1074456 ttgtaatttagaggagttgtcaatggtttgaggaaccaattgtattattttcattcgattcattgtaatttgcttttatcctaaattatacaactccata 1074555  T
Q  473 ggtgtttt 480  Q
     |||||||    
T  1074556 agtgtttt 1074563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 387 - 481
Target Start/End: Complemental strand, 21545896 - 21545802
Alignment:
Q  387 agttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttta 481  Q
    ||||| ||||||||| |||||||| |||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||  |||||| |||||    
T  21545896 agttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaactcacttttatcctaaatcatgcaactacataggtttttta 21545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 355 - 524
Target Start/End: Complemental strand, 20461776 - 20461599
Alignment:
Q  355 catttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcct 454  Q
    ||||| ||| |||||||  |||||||||  ||||||| ||||||||| |||||||  |||||||||||||||||||||| |||||| | | ||| |||||    
T  20461776 catttcaaggcaaataatatgtaatttaagggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaactcaatttcatcct 20461677  T
Q  455 aaatcatgcaactctataggtgt--------tttatagtgagaaattatgtaaatcggcaaatcaagacattaagtga 524  Q
    |||||| |||||   ||||||||        ||| ||||||||||| |||||||||||||||  ||||||| ||||||    
T  20461676 aaatcacgcaacatgataggtgtttcgagtctttttagtgagaaatcatgtaaatcggcaaaataagacatcaagtga 20461599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 351 - 474
Target Start/End: Original strand, 7956163 - 7956286
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||  |||||| |||||||||| |||||||  ||||||||| | ||| |  |||||||||||||||||||||| ||||||||  ||||||    
T  7956163 tttgcatttgaaggaaaataagttgtaatttagaggagttatcaatggtttaaagaaaaatttgtattgttttcattcgagtcgttgtaattcgctttta 7956262  T
Q  451 tcctaaatcatgcaactctatagg 474  Q
    || ||||||| | ||||| |||||    
T  7956263 tcttaaatcaagaaactccatagg 7956286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 478
Target Start/End: Original strand, 4828806 - 4828900
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtt 478  Q
    |||||||  ||||||||| |||||| | ||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  4828806 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgcaactccatagttgtt 4828900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 396 - 468
Target Start/End: Complemental strand, 8309118 - 8309047
Alignment:
Q  396 tggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    |||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  8309118 tggtttgaggaaca-gttgtattgttttcatttgagtcattgtgatttagttttatcctaaatcatgcaactc 8309047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 480
Target Start/End: Original strand, 21471780 - 21471907
Alignment:
Q  352 ttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttat 451  Q
    ||||||||||||||||||||  ||  ||||| |||| ||| ||||| ||||| |||||| || ||||||||||| ||||||  |||||||||  ||||||    
T  21471780 ttgcatttgaagacaaataagatgatatttagaggatttgtcaatgattttaagaacatattatattgttttcactcgagt-tttgtaattttgttttat 21471878  T
Q  452 cctaaatcatgcaactctataggtgtttt 480  Q
    |||| ||||||||| || |||||||||||    
T  21471879 cctagatcatgcaattccataggtgtttt 21471907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 315200 - 315330
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttata 483  Q
    |||||||| ||||||||| | ||| || ||||||| || ||| |||||| ||||| ||| | |||||||||| |||||||||||| ||||||||||| ||    
T  315200 aggagttgtcaatggtttgaagaatatattgtattattgtcactcgagttattgttattcagttttatcctagatcatgcaactccataggtgttttgta 315299  T
Q  484 gtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    || || ||| ||||||||   |||||||||||||    
T  315300 gtaaggaatcatgtaaat---caaatcaagacat 315330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 378 - 514
Target Start/End: Complemental strand, 3269071 - 3268927
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt 477  Q
    ||||| |||||||| || |||||| || ||||| ||||||||||||| || ||||  |||||||| ||||||||||||||||||||||||   || ||||    
T  3269071 atttagaggagttgtcattggtttgagtaacattttgtattgttttcgtttgagttgttgtaattcacttttatcctaaatcatgcaacttcgtatgtgt 3268972  T
Q  478 ttta--------tagtgagaaattatgtaaatcggcaaatcaaga 514  Q
    ||||        ||||||||||| ||||||||||||||| |||||    
T  3268971 tttaagtctttttagtgagaaatcatgtaaatcggcaaaacaaga 3268927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 384 - 508
Target Start/End: Original strand, 30405611 - 30405741
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggt-------g 476  Q
    ||||||||  |||||||| |||||| | |||||||||||| ||| || ||||||||||| || ||||||||||| |||||||||| ||||||       |    
T  30405611 aggagttgttaatggtttgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcctaaaccatgcaactccataggtgttttgag 30405709  T
Q  477 ttttatagtgagaaattatgtaaatcggcaaa 508  Q
    |||| ||||||||||| |||||||||||||||    
T  30405710 ttttttagtgagaaatcatgtaaatcggcaaa 30405741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 46054680 - 46054796
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||| |||||||| |||||||  ||| ||||| |||||||| || || ||| |||||||  || ||||||||| |||| |||| ||||||||||||||||    
T  46054680 tttgtatttgaaggcaaataagatgtcatttaaaggagttgtcattgatttgaggaacaatttatattgttttaattcaagtcgttgtaatttactttta 46054779  T
Q  451 tcctaaatcatgcaact 467  Q
    |  ||||||||||||||    
T  46054780 taataaatcatgcaact 46054796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 480
Target Start/End: Original strand, 7815257 - 7815434
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttat-ttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 401  Q
    ||||||| ||||||||||||||||| ||| |  |||||| ||  ||| | ||||||||||||| ||||||  ||  | ||| |||| ||| |||||||||    
T  7815257 atgacagggtatcatatgatatttt-ggttatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggttt 7815355  T
Q  402 taggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
     || ||||| ||||||| |||||| ||| ||  |||||||| | |||||| |||||||||||||||  |||||||||||    
T  7815356 aagaaacatattgtatttttttcactcgggtggttgtaattcagttttattctaaatcatgcaacttcataggtgtttt 7815434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 480
Target Start/End: Complemental strand, 7372666 - 7372569
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatc-ctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| || |||||| | |||| | |||||||||||||||||||||| |||||||| | ||||||| | |||||||||||||  |||||||||||    
T  7372666 aggagttgtcattggtttgatgaactttttgtattgttttcattcgagtcgttgtaattcaattttatcacgaaatcatgcaacttcataggtgtttt 7372569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 8837444 - 8837536
Alignment:
Q  25 ccatcaaggagtctgaaaatctcaacactctaggcatcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagt 118  Q
    |||||||||||||| ||| |||||||| |||||  ||||||| ||||| |||||| |||||||||||||||||  ||||| ||||||| |||||    
T  8837444 ccatcaaggagtctcaaa-tctcaacaatctagagatcaccaccttatatggaaatctcaaggaacatgagcagaaaatcacaaggtttaaagt 8837536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 303 - 480
Target Start/End: Complemental strand, 2353421 - 2353249
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    ||||| ||| ||| ||||||||||||||  |  |||||| | | ||| ||||||||||||||||| |||   || ||||| ||||||||   ||| |||     
T  2353421 atgacggagcatcgtatgatattttaggctatgtttttagttgttttctttgcatttgaagacaa-taagaggtcatttagaggagttgtacatgctttg 2353323  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
     ||||||| ||||||||| |||||||||| | |||||||| ||    ||||||||||||||||||| |||||||||||    
T  2353322 gggaacattttgtattgtattcattcgagacgttgtaattcac----atcctaaatcatgcaactccataggtgtttt 2353249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 5312857 - 5312789
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||||| ||||| |||||||| ||||||||| || | |||||||||| |||||||||||    
T  5312857 ttgtattgttttcatttgagtcgttgtaattcacttttatcttatagcatgcaactccataggtgtttt 5312789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 37144963 - 37145031
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||| ||||||||| |||| ||||||| || |||||||||||||||||||||||  ||||||||||    
T  37144963 ttgtattattttcattcaagtcgttgtaatatatttttatcctaaatcatgcaactccgtaggtgtttt 37145031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 466
Target Start/End: Original strand, 9066119 - 9066227
Alignment:
Q  356 atttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatccta 455  Q
    |||||||||||||||| |||  |  || || ||||| ||||| |||||||||||| |||||||||||||| |||||||   |||||| |||||||||| |    
T  9066119 atttgaagacaaataagttgatagatagagaagttgtcaatgtttttaggaacatattgtattgttttcactcgagtc--ggtaattcacttttatccaa 9066216  T
Q  456 aatcatgcaac 466  Q
     ||||||||||    
T  9066217 gatcatgcaac 9066227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 517
Target Start/End: Complemental strand, 20470935 - 20470768
Alignment:
Q  359 tgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaat 458  Q
    |||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| || ||||||||||| |  |||| |||||||| ||||| | |||||||    
T  20470935 tgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcactttcagcctaaat 20470836  T
Q  459 catgcaactctatag---------gtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    |||||| ||  ||||         |||||||||||||| |||  |||||||||| |||||||||||||    
T  20470835 catgcatctgcatagctgttttgagtgttttatagtgataaagcatgtaaatcgacaaatcaagacat 20470768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 6646226 - 6646124
Alignment:
Q  25 ccatcaaggagtctgaaaatctcaacactctaggcatcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagttggtga 124  Q
    |||||||||||||| |||||||| ||||||||| |||||    | || |||||||||||||||| ||||| ||| ||||  |||||||||||| | ||||    
T  6646226 ccatcaaggagtctcaaaatctccacactctagacatcaatgccataattggaaagctcaaggagcatgatcattaaattacaaggttgaaagctagtga 6646127  T
Q  125 gga 127  Q
    |||    
T  6646126 gga 6646124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 2632521 - 2632440
Alignment:
Q  399 ttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||| ||||||| |||||| |||| || |||||||| | |||||||| | |||||||||||  |||||||||||    
T  2632521 ttttaggaacatattgtattattttcaatcgaatcgttgtaattcagttttatccaagatcatgcaacttcataggtgtttt 2632440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 603 - 648
Target Start/End: Original strand, 3400250 - 3400295
Alignment:
Q  603 gatcggtggaaaaaacacagttttcttctcttaaaccctaagtagt 648  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  3400250 gatcagtggaaaaaacccagttttcttctcttaaaccctaagtagt 3400295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 7361705 - 7361648
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatc-ctaaatcatgcaactc 468  Q
    ||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||    
T  7361705 ttgtaatgttttcattcgagtcattgtaactcacttttatcactaaatcatgcaactc 7361648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 517
Target Start/End: Complemental strand, 9761493 - 9761373
Alignment:
Q  406 aacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt---------atagtgagaaattatg 496  Q
    ||||| ||||||| |||||| || |||| |||||||| |||||||||||| || |||||| || |||||||||||         ||||||| |||| |||    
T  9761493 aacatattgtatttttttcactctagtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatg 9761394  T
Q  497 taaatcggcaaatcaagacat 517  Q
    ||||||| |||||||||||||    
T  9761393 taaatcgacaaatcaagacat 9761373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 416 - 517
Target Start/End: Complemental strand, 24597071 - 24596962
Alignment:
Q  416 attgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttta--------tagtgagaaattatgtaaatcggcaa 507  Q
    |||||||| ||  ||||| |||||||| | |||||||||||||||||||||||  |||||||||||        |||||||||||  |||||||||||||    
T  24597071 attgttttgatctgagtcgttgtaattcaattttatcctaaatcatgcaactccgtaggtgttttaagtctttttagtgagaaatcgtgtaaatcggcaa 24596972  T
Q  508 atcaagacat 517  Q
    | ||||||||    
T  24596971 aacaagacat 24596962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 415 - 517
Target Start/End: Original strand, 7494752 - 7494853
Alignment:
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaaga 514  Q
    |||| |||||| || |||| |||||||| |||||||||||| ||| ||||| || ||||| ||||| ||||| ||||| |||||||| |  |||||||||    
T  7494752 tattcttttcactcaagtcgttgtaattcacttttatcctagatcttgcaattccatagg-gttttgtagtgggaaatcatgtaaattgaaaaatcaaga 7494850  T
Q  515 cat 517  Q
    |||    
T  7494851 cat 7494853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 480
Target Start/End: Complemental strand, 9801952 - 9801878
Alignment:
Q  406 aacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| ||||||| |||||| || |||| |||||||| |||||||||||| || |||||| || |||||||||||    
T  9801952 aacatattgtatttttttcactctagtcgttgtaattcacttttatcctagattatgcaattccataggtgtttt 9801878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 12358833 - 12358765
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||| || ||||| ||||| |||||||| | |||||||||||||||| |||||  |||||||||||    
T  12358833 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgtttt 12358765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 467
Target Start/End: Complemental strand, 4977892 - 4977837
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    ||||||| || |||||| |||| |||||||| ||||||||||||||| ||||||||    
T  4977892 ttgtatttttatcattcaagtcgttgtaattcacttttatcctaaattatgcaact 4977837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 477
Target Start/End: Original strand, 2351023 - 2351105
Alignment:
Q  395 atggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt 477  Q
    ||||||| || ||||| ||||||||||||||||| ||| ||||||||| | |||  |||  |||||||| ||| |||||||||    
T  2351023 atggtttgagaaacattttgtattgttttcattccagttattgtaattcaatttcttccataatcatgcgactttataggtgt 2351105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 9755829 - 9755883
Alignment:
Q  398 gttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatc 452  Q
    |||| |||||| | ||||||| |||||| ||||||| ||||||||||||||||||    
T  9755829 gtttgaggaacgttttgtatttttttcactcgagtcgttgtaatttacttttatc 9755883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 9800625 - 9800679
Alignment:
Q  398 gttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatc 452  Q
    |||| |||||| | ||||||| |||||| ||||||| ||||||||||||||||||    
T  9800625 gtttgaggaacgttttgtatttttttcactcgagtcgttgtaatttacttttatc 9800679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 20446221 - 20446305
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcat 435  Q
    ||||||||||||||||| |||  ||  | ||| |||||||| ||||||||| || ||||| |||| ||||||||| | |||||||    
T  20446221 tttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacatattgttttgttttcacttgagtcat 20446305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 351 - 517
Target Start/End: Original strand, 18897973 - 18898139
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||||||||||| |||  |  || | || ||| ||||||||| |||||||| |||||||||||||| ||||| | ||||||||  |||||     
T  18897973 tttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtattgttttcactcgagccgttgtaattcgcttttt 18898072  T
Q  451 tcctaaatcatgcaactctataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    || || |  ||||||||  ||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  18898073 tcatagactatgcaacttcataggtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacat 18898139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 313 - 480
Target Start/End: Complemental strand, 1676466 - 1676299
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||| ||||| ||| | ||||||  ||  ||| ||| |||||||||||||||||  || ||  || |||||||| ||||||||| |||||||| |    
T  1676466 atcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatat 1676367  T
Q  413 tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||| |||||||||||||||  |||||||| | |||||||||| |||||||||||| |||| ||||||    
T  1676366 tgtaatgttttcattcgagtttttgtaattcaattttatcctatatcatgcaactccatagttgtttt 1676299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 313 - 480
Target Start/End: Complemental strand, 1682994 - 1682827
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||| ||||| ||| | ||||||  ||  ||| ||| |||||||||||||||||  || ||  || |||||||| ||||||||| |||||||| |    
T  1682994 atcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatat 1682895  T
Q  413 tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||| |||||||||||||||  |||||||| | |||||||||| |||||||||||| |||| ||||||    
T  1682894 tgtaatgttttcattcgagtttttgtaattcaattttatcctatatcatgcaactccatagttgtttt 1682827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 22119628 - 22119757
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| ||||| |   || ||||| |||||||| ||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||    
T  22119628 tttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaacaaattgtaatgttttcgttcgagtcattgtaatttactttta 22119727  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
     || |||||||||||||  |||||| ||||    
T  22119728 cccaaaatcatgcaactacataggtatttt 22119757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 10576462 - 10576609
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt 477  Q
    ||||| || ||||| | ||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||| |||||| || |||||  ||||||||    
T  10576462 atttagagaagttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattcacttttattctaaattatacaacttcataggtgt 10576561  T
Q  478 --------tttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
            ||| ||||||||||||||||||||||| ||| ||||||||    
T  10576562 tttgattctttctagtgagaaattatgtaaatcggaaaaacaagacat 10576609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 21167711 - 21167840
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||  ||||||   || ||||| |||||||| | ||| ||| |||||||| |||||||||||||||||||||  ||||||||||||||||    
T  21167711 tttgcatttgaaggaaaataagacgtcatttagaggagttgtccatgttttaaggaacattttgtattgttttcattcgagttgttgtaatttactttta 21167810  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||  ||| ||||  |||||||||||    
T  21167811 tcctaaaatatgtaacttcataggtgtttt 21167840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 315 - 524
Target Start/End: Original strand, 9288156 - 9288373
Alignment:
Q  315 catatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttg 414  Q
    ||||||||||||||||  |  |||||| ||| ||| ||||||| | |||  |||| | |||||||| | |||||||  ||||||||| |||||||  |||    
T  9288156 catatgatattttaggatatgtttttagtagttttctttgcatataaaggaaaattagttgtaattaagaggagttttcaatggtttgaggaacaaattg 9288255  T
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgt--------tttatagtgagaaattatgtaaatcggca 506  Q
    ||||||||||||| |||||||| ||||| | ||||||| ||||||||| | ||| ||| || |        ||| ||||||||||| |||||||||||||    
T  9288256 tattgttttcatttgagtcattataattcatttttatcataaatcatgtacctccatatgtttttttagtctttttagtgagaaatcatgtaaatcggca 9288355  T
Q  507 aatcaagacattaagtga 524  Q
    || |||||||| ||||||    
T  9288356 aaacaagacatcaagtga 9288373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 387 - 517
Target Start/End: Complemental strand, 47024853 - 47024723
Alignment:
Q  387 agttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgttttatagtg 486  Q
    ||||| ||||||||| |  || || |||||||||||||| ||||| | || ||||| |||||||||||| |||||||||||  |  |||||||| |||||    
T  47024853 agttgtcaatggtttgaaaaatatattgtattgttttcactcgagccgttctaattcacttttatcctagatcatgcaacttcaatggtgttttgtagtg 47024754  T
Q  487 agaaattatgtaaatcggcaaatcaagacat 517  Q
    |||||| ||||||||||  ||||||||||||    
T  47024753 agaaatcatgtaaatcgaaaaatcaagacat 47024723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 395 - 480
Target Start/End: Complemental strand, 13275833 - 13275748
Alignment:
Q  395 atggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||| || |||||||||||||||||||||||||||| || ||||| ||||| |||| ||||||| ||||||| ||||||||||    
T  13275833 atggtttgagaaacatgttgtattgttttcattcgagtcgttataattcactttcatcccaaatcatacaactctgtaggtgtttt 13275748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 377 - 478
Target Start/End: Original strand, 46647204 - 46647305
Alignment:
Q  377 aatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtg 476  Q
    |||||| || ||||| ||||||||| | ||| || ||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||| ||| |||    
T  46647204 aatttagagaagttgtcaatggtttcaagaatattttgtattgttttcattctagtcggtgtaattcacttttatcctaaatcatgcaactccataagtg 46647303  T
Q  477 tt 478  Q
    ||    
T  46647304 tt 46647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 347 - 462
Target Start/End: Complemental strand, 5906857 - 5906742
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||||||||||||||||| ||  ||  | ||| |||| ||| ||||||||| |||||||| || ||||||||||| ||||||||||  |||| |||    
T  5906857 tttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttcactcgagtcattacaattcact 5906758  T
Q  447 tttatcctaaatcatg 462  Q
    ||||||| ||||||||    
T  5906757 tttatcccaaatcatg 5906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 468
Target Start/End: Complemental strand, 25315412 - 25315247
Alignment:
Q  303 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 402  Q
    ||||| ||| ||||||||| ||||||| ||   |||||| ||  ||| ||| |||||||||| ||||||  ||  |  || |||||||| ||||| |||     
T  25315412 atgaccgagcatcatatgacattttagttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgctttg 25315313  T
Q  403 aggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    |||||||| |||||||||||||| | ||||| |||||||| | |||||||||| ||||||||||||    
T  25315312 aggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactc 25315247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 347 - 467
Target Start/End: Original strand, 24925783 - 24925903
Alignment:
Q  347 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 446  Q
    |||||||| ||||||||| ||||||   || ||||| | |||||| |||| |||| || ||||| |||||||||||||||| |||||  ||||||| |||    
T  24925783 tttatttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgttttcatttgagtcgctgtaattcact 24925882  T
Q  447 tttatcctaaatcatgcaact 467  Q
    |||||| ||||||||| ||||    
T  24925883 tttatcataaatcatgtaact 24925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 27302796 - 27302876
Alignment:
Q  387 agttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    ||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||| | || ||| ||| |||||||||||    
T  27302796 agttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattcaattatatactagatcatgcaact 27302876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 351 - 517
Target Start/End: Complemental strand, 34864424 - 34864253
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||| ||||||||||||||||  |  || ||| |||||||| ||||||||| |||||| | |  ||||||||||| |||  ||||||||||| |||||||    
T  34864424 tttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactcg--tcattgtaattcactttta 34864327  T
Q  451 tcctaaatcatgcaactc-------tataggtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    |||||||| ||| |||||       | |  ||||||| ||||||||||| |||||||||| |||||||||||||    
T  34864326 tcctaaattatgaaactccatgtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacat 34864253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 406 - 481
Target Start/End: Complemental strand, 10320297 - 10320222
Alignment:
Q  406 aacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttta 481  Q
    ||||| ||||||| |||||| ||||||| |||||||| |||||||||||| | |||||||||| ||||||||||||    
T  10320297 aacatattgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgtttta 10320222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 517
Target Start/End: Original strand, 19601780 - 19601955
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||| ||| ||||| ||  || | ||| |||||||| || |||||| |||||| | || |||| ||||||||| | |  |||||||| |||||||    
T  19601780 tttgcatttaaaggcaaattaaaagtcaattagaggagttgtcattggtttgaggaactttttctatttttttcattcaaattgttgtaattcactttta 19601879  T
Q  451 tcctaaatcatgcaactctataggt---------gttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    |||||||||||||||||| ||||||         ||||| ||||||||||| |||||||||  |||||||||||||    
T  19601880 tcctaaatcatgcaactccataggtatttttagcgttttctagtgagaaatcatgtaaatcaacaaatcaagacat 19601955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 26159773 - 26159867
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||| |||| |||| || ||||| |||||||||||||||||||||| |||||||||| |||| |||||||| || |||||  ||| |||||||    
T  26159773 gagttgtcaatagtttaagaaacattttgtattgttttcattcgagtcgttgtaatttagttttgtcctaaattatccaacttcatatgtgtttt 26159867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 9783083 - 9782992
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggt 475  Q
    |||||||| |||| |||| |||||||| |||||||||||||| || | ||||||||||| | ||||||  || |||||||||||| ||||||    
T  9783083 aggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattcagttttattttagatcatgcaactccataggt 9782992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 480
Target Start/End: Complemental strand, 17339984 - 17339817
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||||||||||||  |  |||||| |   ||||||| ||||| ||| |||||||   |  ||||| |||||||  | |||| || |||||||| |    
T  17339984 atcatatgatattttaggctatgtttttaattattttatttacatttaaaggcaaataagaggacatttagaggagttatccatggattgaggaacattt 17339885  T
Q  413 tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||  ||||||||| |||| |||||||| | |||||||||||||||||||| |  |||||||||||    
T  17339884 tgtatctttttcattctagtctttgtaattcaattttatcctaaatcatgcaatttcataggtgtttt 17339817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 1695935 - 1695858
Alignment:
Q  396 tggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctatag 473  Q
    |||||| |||||||| |||||||| ||| ||| ||||| |||||||| | |||||||||| |||||||||||| ||||    
T  1695935 tggtttcaggaacatattgtattggttttatttgagtctttgtaattcaattttatcctagatcatgcaactccatag 1695858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 455
Target Start/End: Complemental strand, 12111510 - 12111360
Alignment:
Q  304 tgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttta 403  Q
    |||||||| ||||||||| |||||  || |  |||||| ||  |||||||||||||||||||||| | ||   |||  | |||||||| ||||||||| |    
T  12111510 tgacagagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaaaagatgagaat--agaggagttgtcaatggtttga 12111413  T
Q  404 ggaacatgttgtattgtttt-cattcgagtcattgtaatttacttttatccta 455  Q
    ||||||| ||||||| |||| ||  |||||| |||||||| ||||||||||||    
T  12111412 ggaacatattgtattttttttcacacgagtcgttgtaattcacttttatccta 12111360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 15192238 - 15192314
Alignment:
Q  404 ggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||| |||||||||||||| || |||  |||||||| |||||||||||| ||| |||| ||| |||||||||||    
T  15192238 ggaacatattgtattgttttcactcaagttgttgtaattcacttttatcctagatcgtgcagctccataggtgtttt 15192314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 23353647 - 23353705
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttat 451  Q
    ||||||||| |||||| | |||||||||||||||||||||| |||||||| | ||||||    
T  23353647 caatggtttaaggaactttttgtattgttttcattcgagtcgttgtaattcaattttat 23353705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 17026745 - 17026700
Alignment:
Q  435 ttgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||    
T  17026745 ttgtaattcacttttatcctagatcatgcaactccataggtgtttt 17026700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 481
Target Start/End: Original strand, 18444293 - 18444362
Alignment:
Q  412 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttta 481  Q
    ||||| |||||||||||||| |  ||||||| | ||||||||||||||| ||||||| |||||| |||||    
T  18444293 ttgtaatgttttcattcgagccgctgtaattcagttttatcctaaatcacgcaactccataggtatttta 18444362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 20044224 - 20044277
Alignment:
Q  415 tattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    |||||||||||||||||||||||||||| | |||  |||| |||||||||||||    
T  20044224 tattgttttcattcgagtcattgtaattcaatttcttccttaatcatgcaactc 20044277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 21077215 - 21077344
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    ||||||||||||| ||||| |   || ||||| |||||||| ||||||||| || ||| | ||||||| |||| ||||||||| ||||| || | |||||    
T  21077215 tttgcatttgaaggcaaattagaagtcatttagaggagttgtcaatggtttgagaaaccttttgtattatttttattcgagtcgttgtagttcaatttta 21077314  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||  |||||||  || || |||||||||||    
T  21077315 tcacaaatcatcaaattccataggtgtttt 21077344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 4732786 - 4732848
Alignment:
Q  405 gaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    |||||| || ||||||||||||| ||||| ||||||||||  ||||||||||| ||| |||||    
T  4732786 gaacattttatattgttttcatttgagtcgttgtaatttaaatttatcctaaaccatacaact 4732848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 646
Target Start/End: Original strand, 5676664 - 5676704
Alignment:
Q  606 cggtggaaaaaacacagttttcttctcttaaaccctaagta 646  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  5676664 cggtggaaaaagtccagttttcttctcttaaaccctaagta 5676704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 19101111 - 19101187
Alignment:
Q  397 ggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctatag 473  Q
    ||||| ||||| || ||||||||| || |||  ||||||||||||||| |||  |||| ||||||||||||| ||||    
T  19101111 ggtttgaggaatattttgtattgtctttattttagtcattgtaatttagtttcttccttaatcatgcaactcgatag 19101187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 29437522 - 29437582
Alignment:
Q  420 ttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    |||||||||||||  | |||||| | ||||||||||||||||||||||  |||| ||||||    
T  29437522 ttttcattcgagtattcgtaattcagttttatcctaaatcatgcaacttcatagctgtttt 29437582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 31860013 - 31859937
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcatt 427  Q
    |||||||||||||| |||||||  || ||||| || ||||| |||| |||| |||||||| ||| | ||||||||||    
T  31860013 tttgcatttgaagaaaaataaaaggttatttagagaagttgtcaattgtttgaggaacattttgcactgttttcatt 31859937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 397 - 467
Target Start/End: Original strand, 21425 - 21495
Alignment:
Q  397 ggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    ||||| |||||| | |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  21425 ggtttgaggaacttattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaact 21495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 6220 - 6282
Alignment:
Q  393 caatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatccta 455  Q
    ||||||||| ||||||||  |||||| |||||| || ||||||||||||||||||||||||||    
T  6220 caatggtttgaggaacataatgtattattttcactcaagtcattgtaatttacttttatccta 6282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 517
Target Start/End: Complemental strand, 228252 - 228144
Alignment:
Q  416 attgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtt-------ttatagtgagaaattatgtaaatcggcaaa 508  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||||||| ||| | |||||       |||||||||||||| |||||||||| ||||    
T  228252 attgttttcattcgagtcgttgtaattcatttttatcataaatcatgcaaccctaaaagtgttgtatgttttatagtgagaaatcatgtaaatcgacaaa 228153  T
Q  509 tcaagacat 517  Q
    |||||||||    
T  228152 tcaagacat 228144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 58760 - 58845
Alignment:
Q  384 aggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactct 469  Q
    |||||||| ||||||||| |||||| | |||||||||||||||||| |||||||||||  |  |||||||| ||||||||||||||    
T  58760 aggagttgtcaatggtttgaggaactttttgtattgttttcattcgggtcattgtaatccaggtttatcctgaatcatgcaactct 58845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 468
Target Start/End: Original strand, 1452 - 1542
Alignment:
Q  378 atttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactc 468  Q
    ||||| |||||||| ||||  ||| |||| ||| ||||||||||||||||||| ||||| ||||| ||||||||| | |||||||||||||    
T  1452 atttagaggagttgtcaatattttgaggagcattttgtattgttttcattcgattcattttaattcacttttatcattaatcatgcaactc 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 386 - 467
Target Start/End: Complemental strand, 1931 - 1850
Alignment:
Q  386 gagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaact 467  Q
    |||||| ||||| ||| |||||  | ||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||    
T  1931 gagttgtcaatgatttaaggaaatttttgtattgttttcattctagtcattgtaatctagttttatcctaaattatgcaact 1850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 27087 - 26959
Alignment:
Q  351 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactttta 450  Q
    |||||||||||||| ||||||  |  || ||||| |||||| | |||| || |||| ||  |||||| ||||||  || |||||||||||||||||||||    
T  27087 tttgcatttgaagataaataagatagaagttacaagagttgtctatggattgaggagcaaattgtat-gttttcgctcaagtcattgtaatttactttta 26989  T
Q  451 tcctaaatcatgcaactctataggtgtttt 480  Q
    ||||||||||| |||||  |||||||||||    
T  26988 tcctaaatcatacaactacataggtgtttt 26959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 480
Target Start/End: Complemental strand, 11868 - 11701
Alignment:
Q  313 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 412  Q
    ||||||||||||||||||  |  |||||| |   ||||||||||||||||| ||||  |   || ||||| |||||||| ||||| ||| | |||| | |    
T  11868 atcatatgatattttaggctatgtttttagttattttatttgcatttgaaggcaaaatagaagtcatttagaggagttgtcaatgatttgatgaactttt 11769  T
Q  413 tgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 480  Q
    ||||| ||||||||| || || |||||||| | |||| |||||||||||||||||  || ||||||||    
T  11768 tgtatagttttcatttgaatcgttgtaattcagttttgtcctaaatcatgcaactacatgggtgtttt 11701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 517
Target Start/End: Original strand, 12358 - 12401
Alignment:
Q  474 gtgttttatagtgagaaattatgtaaatcggcaaatcaagacat 517  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||    
T  12358 gtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacat 12401  T

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