View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_30 (Length: 337)

Name: NF18580_low_30
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_30
NF18580_low_30
[»] chr1 (9 HSPs)
chr1 (13-321)||(41863027-41863337)
chr1 (14-118)||(9825619-9825724)
chr1 (15-126)||(38685434-38685546)
chr1 (15-109)||(23480945-23481040)
chr1 (52-118)||(17723666-17723732)
chr1 (52-124)||(38508657-38508729)
chr1 (15-74)||(5429389-5429449)
chr1 (162-308)||(9825437-9825585)
chr1 (55-107)||(49233831-49233883)
[»] chr2 (5 HSPs)
chr2 (13-321)||(24322892-24323198)
chr2 (13-294)||(41582249-41582523)
chr2 (15-104)||(28404828-28404918)
chr2 (42-116)||(16969951-16970025)
chr2 (49-109)||(20640126-20640186)
[»] chr3 (5 HSPs)
chr3 (13-108)||(15993289-15993385)
chr3 (15-109)||(17757705-17757800)
chr3 (15-109)||(19059025-19059120)
chr3 (15-109)||(2702168-2702263)
chr3 (19-108)||(53047206-53047296)
[»] chr4 (8 HSPs)
chr4 (14-321)||(49200224-49200525)
chr4 (15-109)||(29968268-29968363)
chr4 (16-223)||(33315490-33315690)
chr4 (15-109)||(47428065-47428160)
chr4 (13-73)||(47965961-47966022)
chr4 (15-109)||(2479322-2479417)
chr4 (15-109)||(41851158-41851252)
chr4 (49-109)||(18000598-18000658)
[»] scaffold0192 (1 HSPs)
scaffold0192 (16-125)||(19400-19510)
[»] chr8 (11 HSPs)
chr8 (24-202)||(43418491-43418662)
chr8 (15-109)||(1852227-1852322)
chr8 (15-109)||(1199552-1199647)
chr8 (64-115)||(15880807-15880858)
chr8 (15-109)||(604155-604250)
chr8 (13-104)||(5241198-5241289)
chr8 (38-109)||(30437156-30437227)
chr8 (15-80)||(1851110-1851176)
chr8 (15-108)||(44429580-44429673)
chr8 (53-102)||(32721035-32721084)
chr8 (59-108)||(44433316-44433365)
[»] chr7 (6 HSPs)
chr7 (15-109)||(16375727-16375822)
chr7 (15-109)||(45286465-45286560)
chr7 (15-109)||(11642413-11642508)
chr7 (15-109)||(9141280-9141375)
chr7 (49-109)||(45418596-45418656)
chr7 (52-101)||(48844403-48844452)
[»] scaffold1155 (1 HSPs)
scaffold1155 (15-124)||(771-881)
[»] scaffold0345 (1 HSPs)
scaffold0345 (15-124)||(9336-9446)
[»] scaffold0105 (1 HSPs)
scaffold0105 (15-124)||(29534-29644)
[»] chr5 (6 HSPs)
chr5 (18-109)||(31487296-31487388)
chr5 (15-109)||(19123205-19123300)
chr5 (15-109)||(14164496-14164591)
chr5 (15-109)||(31486278-31486373)
chr5 (13-73)||(11298744-11298805)
chr5 (35-71)||(37340088-37340124)
[»] scaffold0013 (2 HSPs)
scaffold0013 (15-109)||(104681-104776)
scaffold0013 (15-86)||(127353-127425)
[»] chr6 (4 HSPs)
chr6 (15-106)||(1394066-1394158)
chr6 (12-71)||(15298163-15298223)
chr6 (15-101)||(7018394-7018481)
chr6 (156-184)||(23307348-23307376)
[»] scaffold0059 (1 HSPs)
scaffold0059 (15-109)||(71289-71384)
[»] scaffold0121 (1 HSPs)
scaffold0121 (43-104)||(25534-25595)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 41863027 - 41863337
Alignment:
Q  13 aatatcttcaccatcttcattattatcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagaca 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  41863027 aatatcttcaccatcttcattattatcaatattttcagtctttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagatg 41863126  T
Q  113 ttgggagatataaatatataatccaacacgtcgcattgattgcccttgactcttgttaatagtcatggcaaaagagacaattaaagggaactgtcgtctt 212  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41863127 ttgggagatataaatatataatccaacatgtcgcattgattgccgttgactcttgttaatagtcatggcaaaagagacaactaaagggaactgtcgtctt 41863226  T
Q  213 taaaacttgaaagaaatttggatgtc--aaggtgacatagataaatgcgatataaatactttttctttaacactactactagatatttccttaccctcta 310  Q
    |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||    
T  41863227 taaaacttgaaagaaattcggatgtctgaaggtgacatagataaatgcgatataaatattttttctccaacactactaccagatatttccttaccctcta 41863326  T
Q  311 gcacatatttt 321  Q
    |||||||||||    
T  41863327 gcacatatttt 41863337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 9825724 - 9825619
Alignment:
Q  14 atatcttcaccatcttcattatta-tcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagaca 112  Q
    ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||| | ||||||||||||| ||||||||  |||||||||| |     
T  9825724 atatctttaccatcttcattattaatcaatatcttcagtcattctctggatgtaactctttatacaacaacatatagttgtccatacgaaaatacagtcg 9825625  T
Q  113 ttggga 118  Q
    ||||||    
T  9825624 ttggga 9825619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 38685546 - 38685434
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacat 113  Q
    |||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||| | ||||||||||| || ||| | || |||||||||| | |    
T  38685546 tatcttcaccatcttcatcagtgatcaatatttttagtccttctctggatgtaactctttaaacaacaacatacaactgttcgtgagaaaatacaggcgt 38685447  T
Q  114 tgggagatataaa 126  Q
    ||| |||||||||    
T  38685446 tggtagatataaa 38685434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 23480945 - 23481040
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || |||||||||||||||||||||||||| | | ||||||| || ||||| || ||||||||||    
T  23480945 tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaatagcaacatacaactgtccttgagaaaatacag 23481040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 17723666 - 17723732
Alignment:
Q  52 ccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacattggga 118  Q
    ||||||||| |||||||||| || ||||| ||||||||||||||||||||||| |||||| ||||||    
T  17723666 ccttctctgaatgtaactctggaaacaaccacatataattgtccatgtgaaaagacagacgttggga 17723732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 38508729 - 38508657
Alignment:
Q  52 ccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacattgggagatata 124  Q
    |||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||| | |||| |||||||    
T  38508729 ccttctcttgatgtaactctcgacacaaccacatataattgtccatgtgaaaagacaggcgttggtagatata 38508657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 5429449 - 5429389
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttga 74  Q
    |||||||||||||||||| | | |||||||| || ||||||||||||||||||||||||||    
T  5429449 tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttga 5429389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 9825585 - 9825437
Alignment:
Q  162 ctcttgttaatagtcatggcaaaagagacaattaaagggaactgtcgtctttaaaacttgaaagaaatttgg--atgtcaaggtgacatagataaatgcg 259  Q
    ||||||||||| |||||||||||  ||||   |||||||||| ||||||||||||| ||||||| |||| ||  || | ||| ||| | | |||||  ||    
T  9825585 ctcttgttaatggtcatggcaaattagacggctaaagggaaccgtcgtctttaaaatttgaaaggaattcggacatctgaagatgatagaaataaagacg 9825486  T
Q  260 atataaatactttttctttaacactactactagatatttccttaccctc 308  Q
     |||||||| |||||||  ||||||||| | ||||||| ||| ||||||    
T  9825485 gtataaatattttttctccaacactacttccagatattacctcaccctc 9825437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 49233883 - 49233831
Alignment:
Q  55 tctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatac 107  Q
    ||||| || ||||||||||| | ||||||||||||||| | ||||||||||||    
T  49233883 tctcttgaagtaactcttgaaataacaacatataattgacaatgtgaaaatac 49233831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 24322892 - 24323198
Alignment:
Q  13 aatatcttcaccatcttcattatt----atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaataca 108  Q
    ||||||||||||||||||||||||    | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  24322892 aatatcttcaccatcttcattatttatcaccaatattttcagtcattctctggatgtaactcttgagacatcaacatataattgtccatgtaaaaataca 24322991  T
Q  109 gacattgggagatataaatatataatccaacacgtcgcattgattgcccttgactcttgttaatagtcatggcaaaagagacaattaaagggaactgtcg 208  Q
     || |||||||||||        ||||||||| |||||| |||||||||||| |||||||||||||||||| |||| |||| || |||||||||||| ||    
T  24322992 tacgttgggagatat--------aatccaacatgtcgcaatgattgcccttggctcttgttaatagtcatgacaaatgagagaactaaagggaactgccg 24323083  T
Q  209 tctttaaaacttgaaagaaatttggatgtc--aaggtgacatagataaatgcgatataaatactttttctttaacactactactagatatttccttaccc 306  Q
    ||||| ||||||||||| ||||||||||||   |||||| | ||||||| ||| ||||||||||||||||  ||||| ||||| | ||||| ||||||||    
T  24323084 tctttgaaacttgaaaggaatttggatgtctggaggtgatagagataaacgcggtataaatactttttctccaacaccactaccaaatattaccttaccc 24323183  T
Q  307 tctagcacatatttt 321  Q
    |||||||| ||||||    
T  24323184 tctagcacgtatttt 24323198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 41582523 - 41582249
Alignment:
Q  13 aatatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagac 111  Q
    ||||||||| |||||||  ||||| ||||||||||||| ||||||||| ||||||||||| || |||||||| ||||  |||  ||||||||||||| ||    
T  41582523 aatatcttctccatctttgttatttatcaatattttcaatccttctctagatgtaactctagatacaacaacgtatagctgttaatgtgaaaatacaaac 41582424  T
Q  112 attgggagatataaatatataatccaacacgtcgcattgattgcccttgactcttgttaatagtcatggcaaaagagacaattaaagggaactgtcgtct 211  Q
     |||||||  | || |        | ||| |||||| ||||||||| ||||||||||||||||||||| |||| |||||   |||||| |||||||||||    
T  41582423 gttgggaggaacaact--------ccacatgtcgcaatgattgcccctgactcttgttaatagtcatgacaaatgagaccgctaaaggaaactgtcgtct 41582332  T
Q  212 ttaaaacttgaaagaaatttggatgtcaaggtgacatagataaatgcgatataaatactttttctttaacactactactagat 294  Q
    |||||||||||||| ||||    | | ||||||| | ||||||  ||| |||||||| |||||||  ||||||||||| ||||    
T  41582331 ttaaaacttgaaaggaattcatgtctgaaggtgatagagataatcgcggtataaatattttttctccaacactactacgagat 41582249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 28404918 - 28404828
Alignment:
Q  15 tatcttcaccatcttcatta-ttatcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaa 104  Q
    |||| ||||||||||| | | |||||| ||||||||   ||||||||||||||||||| || ||||| |||||||| ||||||||||||||    
T  28404918 tatcctcaccatcttcgtcagttatcagtattttcaactcttctctggatgtaactctggaaacaaccacatataactgtccatgtgaaaa 28404828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 16970025 - 16969951
Alignment:
Q  42 tattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacattgg 116  Q
    ||||||||| |||||||| || |||||||| || |||   |||||||| |||||||||||||| |||| ||||||    
T  16970025 tattttcaggccttctctagacgtaactctggaaacagtcacatataactgtccatgtgaaaacacaggcattgg 16969951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 20640126 - 20640186
Alignment:
Q  49 agtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||||||||||| ||| ||| ||| || ||||| |  ||||||||||    
T  20640126 agtccttctctggatgtaactcttgaaacagcaatatacaactgtccgtaagaaaatacag 20640186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 15993289 - 15993385
Alignment:
Q  13 aatatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaataca 108  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  15993289 aatatcttcaccatgttcattatttatcaatattttcagtccttctctggatgtaattcttgagacaggaacatataattgtccatgtgaaaataca 15993385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 17757800 - 17757705
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | ||||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| || ||||||||||    
T  17757800 tatcttcaccatcttcatcagtgatcaacatcttcagtccttctctagatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacag 17757705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 19059120 - 19059025
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | ||||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| || ||||||||||    
T  19059120 tatcttcaccatcttcatcagtgatcaacatcttcagtccttctctagatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacag 19059025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 2702263 - 2702168
Alignment:
Q  15 tatcttcaccatcttcattatta-tcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||| |||||||||||||  | ||||||| || ||||||||||| |||||||||||||| ||| ||||||| || ||||| || ||||||||||    
T  2702263 tatcttgaccatcttcattagcaatcaatatctttagtccttctctagatgtaactcttgaaacagcaacatacaactgtccgtgagaaaatacag 2702168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 53047206 - 53047296
Alignment:
Q  19 ttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaataca 108  Q
    |||||||||||||| | | |||||||| || |||||||||||||||||||||||||| ||| ||||||| |  ||||| || |||||||||    
T  53047206 ttcaccatcttcatcactgatcaatatatttagtccttctctggatgtaactcttgaaacagcaacatacatctgtccgtgagaaaataca 53047296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 49200224 - 49200525
Alignment:
Q  14 atatcttcaccatcttcattatta-tcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagaca 112  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||| | ||||||   |||| |||||| || |||||||||  |     
T  49200224 atatcttcacaatcttcattattaatcaatatcttcagtccttctctggatgcaactctttatacaacattgtatagttgtccgtgcgaaaatacatgcg 49200323  T
Q  113 ttgggagatataaatatataatccaacacgtcgcattgattgcccttgactcttgttaatagtcatggcaaaagagacaattaaagggaactgtcgtctt 212  Q
    |||||||        ||||  ||||||| || | | |||||| | ||||||||||||||||||||||||||| ||||||| |||| | ||||||| ||||    
T  49200324 ttgggag--------atattgtccaacatgttggagtgattgtcattgactcttgttaatagtcatggcaaatgagacaactaaatgaaactgtcatctt 49200415  T
Q  213 taaaacttgaaagaaatttggatgtc-aaggtgacatagataaatgcgatataaatactttttctttaacactactactagatatttccttaccctctag 311  Q
    | ||||||||||| |||    |  ||  |||||| | | ||||||||| ||||||||||||||||  |||||||||    |||||| ||| | |||| ||    
T  49200416 tgaaacttgaaaggaatacaaacatctgaggtgatagaaataaatgcggtataaatactttttctccaacactactttcggatattacctcatcctcaag 49200515  T
Q  312 cacatatttt 321  Q
    ||||||||||    
T  49200516 cacatatttt 49200525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 29968363 - 29968268
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | ||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||| || ||||||||||    
T  29968363 tatcttcaccatcttcatcagtgatcaatatttttagtccttctttggatgtaactcttgaaacaacaacatacaattgtccgtgagaaaatacag 29968268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 33315690 - 33315490
Alignment:
Q  16 atcttcaccatcttcatta-ttatcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacatt 114  Q
    |||||||| |||||||||| |||||||||| |||   ||||||||||||||||||||||||||  ||| |||||||| ||||||||||||||  | | ||    
T  33315690 atcttcacaatcttcattaattatcaatatcttcgacccttctctggatgtaactcttgagacggcaatatataattctccatgtgaaaatattggcgtt 33315591  T
Q  115 gggagatataaatatataatccaacacgtcgcattgattgcccttgactcttgttaatagtcatggcaaaagagacaattaaagggaactgtcgtcttta 214  Q
    |        ||| ||||||||||||| |||||| | ||| |||||  ||||||||||| |||| |  ||| ||||||  |||||| |||||||||||||     
T  33315590 g--------aaagatataatccaacatgtcgcagtaatttcccttagctcttgttaattgtcacgaaaaatgagacagctaaaggaaactgtcgtctttg 33315499  T
Q  215 aaacttgaa 223  Q
    |||||||||    
T  33315498 aaacttgaa 33315490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 47428065 - 47428160
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| |  ||||||||| |||||||||||||||| ||||||||||| || ||||| ||  |||||||||    
T  47428065 tatcttcaccatcttcatcagtgatcaatatctatagtccttctttggatgtaactcttgaaacaacaacatacaactgtccgtgaaaaaatacag 47428160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 47965961 - 47966022
Alignment:
Q  13 aatatcttcaccatcttcatta-ttatcaatattttcagtccttctctggatgtaactcttg 73  Q
    |||||||||||||||||||||| |||||||||| || ||| ||||||| |||||||||||||    
T  47965961 aatatcttcaccatcttcattagttatcaatatctttagttcttctctagatgtaactcttg 47966022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 2479322 - 2479417
Alignment:
Q  15 tatcttcaccatcttcattatta-tcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | || ||||||| || |||| ||||||||||||||||||||| |||  |||||| || ||| | || ||||||||||    
T  2479322 tatcttcaccatcttcatcagtaatcaatatctttagtcattctctggatgtaactcttgaaacagtaacatacaactgtgcgtgagaaaatacag 2479417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 41851158 - 41851252
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||| ||| || ||||||||||| |||||||||||||| ||| ||||||| || ||||| || ||||||||||    
T  41851158 tatcttcaccatcttcatcagtgatca-tatctttagtccttctctagatgtaactcttgaaacatcaacatacaactgtccgtgagaaaatacag 41851252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 18000598 - 18000658
Alignment:
Q  49 agtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||||||||||| ||| ||| ||| || ||||| |  ||||||||||    
T  18000598 agtccttctctggatgtaactcttgaaacagcaatatacaactgtccgtaagaaaatacag 18000658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 19400 - 19510
Alignment:
Q  16 atcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacatt 114  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||||| |||||||| | ||| |||||| | ||||||||||||||||||  ||    
T  19400 atcttcaccatcttcattatttatcaatattttcagtatttctctggatgtaattcttgagatagcaaaatataactatccatgtgaaaatacagatttt 19499  T
Q  115 gggagatataa 125  Q
    |||||||||||    
T  19500 gggagatataa 19510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 43418491 - 43418662
Alignment:
Q  24 catcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacattgggagata 122  Q
    ||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| || |  |          
T  43418491 catcttcattatttatcagtattttcaatccttctctggaggtaactcttgagacagcaacatataattgttcatgtgaaaatacatacgtcag------ 43418584  T
Q  123 taaatatataatccaacacgtcgcattgattgcccttgactcttgttaatagtcatggcaaaagagacaattaaagggaa 202  Q
      || ||| ||||||||| ||  || |||||||||||| |||||||||||||||||| |||| |||| |  |||||||||    
T  43418585 --aagataaaatccaacatgtttcaatgattgcccttggctcttgttaatagtcatgacaaatgagaaagctaaagggaa 43418662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 1852322 - 1852227
Alignment:
Q  15 tatcttcaccatcttcattattat-caatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||||| | | |||||| || ||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||    
T  1852322 tatcttcaccatcttcattagtgttcaatatctttagtccttctcttgatgtaactcttgaaacaacaacatacaactgtccatgagaaaatacag 1852227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 1199647 - 1199552
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || ||| |||||||||||||||||||||| ||| ||||||| || ||| | || ||||||||||    
T  1199647 tatcttcaccatcttcatcagtgatcaatatctttagtacttctctggatgtaactcttgaaacagcaacatacaactgttcgtgagaaaatacag 1199552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 15880807 - 15880858
Alignment:
Q  64 gtaactcttgagacaacaacatataattgtccatgtgaaaatacagacattg 115  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  15880807 gtaactcttgatacaacaacatacaattgtccatgcgaaaatacagacattg 15880858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 604155 - 604250
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || | ||||||| |||||||||||||||| ||| ||||||| || ||||| |  ||||||||||    
T  604155 tatcttcaccatcttcatcagtgatcaatatctttaatccttctttggatgtaactcttgaaacagcaacatacaactgtccgtaagaaaatacag 604250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 5241198 - 5241289
Alignment:
Q  13 aatatcttcaccatcttcatta-ttatcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaa 104  Q
    ||||||||||||||||| || | |||||||||| ||   ||||| |||||||| ||||||||| |||  |||||||| |||||||||||||||    
T  5241198 aatatcttcaccatctt-atcagttatcaatatctttgatccttttctggatgcaactcttgatacagtaacatatagttgtccatgtgaaaa 5241289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 30437156 - 30437227
Alignment:
Q  38 tcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    ||||||| || |||||||||||||||||||||||||| | | ||||||| || ||||  || ||||||||||    
T  30437156 tcaatatctttagtccttctctggatgtaactcttgaaatagcaacatacaactgtctgtgagaaaatacag 30437227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 1851176 - 1851110
Alignment:
Q  15 tatcttcaccatcttcattat-tatcaatattttcagtccttctctggatgtaactcttgagacaac 80  Q
    |||||||||||||||||| |  ||||||||| || ||| ||||||| |||||||||||||| |||||    
T  1851176 tatcttcaccatcttcatcagatatcaatatctttagttcttctcttgatgtaactcttgatacaac 1851110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 44429673 - 44429580
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaataca 108  Q
    ||||||||||||||| || | | |||||||| || |||| || | |||||||||||||||| ||||||||||| |||||| | || |||||||||    
T  44429673 tatcttcaccatctttatcaatgatcaatatctttagtcttttt-tggatgtaactcttgaaacaacaacatacaattgtgcgtgagaaaataca 44429580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 32721084 - 32721035
Alignment:
Q  53 cttctctggatgtaactcttgagacaacaacatataattgtccatgtgaa 102  Q
    ||||| ||||||||||||| || ||||| |||||||||||||| ||||||    
T  32721084 cttctatggatgtaactctagaaacaaccacatataattgtccgtgtgaa 32721035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 44433365 - 44433316
Alignment:
Q  59 tggatgtaactcttgagacaacaacatataattgtccatgtgaaaataca 108  Q
    |||||||||||||||| ||||||||||| |||||| | || |||||||||    
T  44433365 tggatgtaactcttgaaacaacaacatacaattgtgcgtgagaaaataca 44433316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 16375727 - 16375822
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || |||||||||||||||||||||||||| |||||| |||| |||||||| || ||||||||||    
T  16375727 tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaacaacatcatacaattgtccttgagaaaatacag 16375822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 45286560 - 45286465
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||| ||||||||| | | |||||||| || |||||||||||||||||||||||||| ||||||||||| || ||||| || ||||||||||    
T  45286560 tatcttcatcatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacag 45286465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 11642413 - 11642508
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||| ||||| | | |||||||| || |||||||||||||||||||||||||| ||| ||||||| || ||||| || ||||||||||    
T  11642413 tatcttcaccattttcatcagtgatcaatatatttagtccttctctggatgtaactcttgaaacagcaacatacaactgtccgtgagaaaatacag 11642508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 9141280 - 9141375
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    ||||||||||||| |||| | | |||||||| || ||||||||||| ||||||||| |||| ||| ||||||| || |||||||| ||||||||||    
T  9141280 tatcttcaccatcatcatcaatgatcaatatctttagtccttctctagatgtaacttttgaaacagcaacatagaaatgtccatgagaaaatacag 9141375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 45418596 - 45418656
Alignment:
Q  49 agtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||| ||||||||||||||||| ||| ||||||| || ||||| || ||||||||||    
T  45418596 agtccttcgctggatgtaactcttgaaacagcaacatacaactgtccgtgagaaaatacag 45418656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 48844403 - 48844452
Alignment:
Q  52 ccttctctggatgtaactcttgagacaacaacatataattgtccatgtga 101  Q
    |||| ||||||||||||||| || ||||| |||| |||||||||||||||    
T  48844403 ccttgtctggatgtaactctagaaacaaccacatgtaattgtccatgtga 48844452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 771 - 881
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacat 113  Q
    |||||||||||||||||| | | |||||||| || |||| ||||| ||||||||||||||| ||| ||||||| |||||||| || |||||||||||  |    
T  771 tatcttcaccatcttcatcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgt 870  T
Q  114 tgggagatata 124  Q
    ||| |||||||    
T  871 tggtagatata 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 9446 - 9336
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacat 113  Q
    |||||||||||||||||| | | |||||||| || |||| ||||| ||||||||||||||| ||| ||||||| |||||||| || |||||||||||  |    
T  9446 tatcttcaccatcttcatcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgt 9347  T
Q  114 tgggagatata 124  Q
    ||| |||||||    
T  9346 tggtagatata 9336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 29534 - 29644
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagacat 113  Q
    |||||||||||||||||| | | |||||||| || |||| ||||| ||||||||||||||| ||| ||||||| |||||||| || |||||||||||  |    
T  29534 tatcttcaccatcttcatcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgt 29633  T
Q  114 tgggagatata 124  Q
    ||| |||||||    
T  29634 tggtagatata 29644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 31487296 - 31487388
Alignment:
Q  18 cttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    ||||||||||||||| | | |||||||| || ||||||||| |||||||||||||||| ||||||||||| || ||||| || ||||||||||    
T  31487296 cttcaccatcttcatcagtgatcaatatctttagtccttctttggatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacag 31487388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 19123300 - 19123205
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || ||||||||||||||| |||||||||| ||| ||||||| || ||||| || ||||||||||    
T  19123300 tatcttcaccatcttcatcaatgatcaatatctttagtccttctctggatataactcttgaaacagcaacatacaactgtccgtgagaaaatacag 19123205  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 14164496 - 14164591
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| |   |||||||| || ||||||||||||||||||||| |||| ||| ||||||| || ||||| || ||||||||||    
T  14164496 tatcttcaccatcttcatcagcgatcaatatctttagtccttctctggatgtaacttttgaaacagcaacatacaactgtccgtgagaaaatacag 14164591  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 31486278 - 31486373
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || |||||||||||||||||||||||||| | | ||||||| || |||||  | ||||||||||    
T  31486278 tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaaaagcaacatacaactgtccgcgagaaaatacag 31486373  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 11298744 - 11298805
Alignment:
Q  13 aatatcttcaccatcttcatta-ttatcaatattttcagtccttctctggatgtaactcttg 73  Q
    |||||||||||| ||||||||| |||||||||| || ||||||||||| |||||||||||||    
T  11298744 aatatcttcaccgtcttcattagttatcaatatctttagtccttctctagatgtaactcttg 11298805  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 37340124 - 37340088
Alignment:
Q  35 ttatcaatattttcagtccttctctggatgtaactct 71  Q
    |||||||||| |||||||||||||| |||||||||||    
T  37340124 ttatcaatatcttcagtccttctctagatgtaactct 37340088  T

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Target: scaffold0013 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 104776 - 104681
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || ||||||||||||||||| |||||||| |||| |||||| || ||||| || ||||||||||    
T  104776 tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgttactcttgaaacaataacatacaactgtccgtgagaaaatacag 104681  T

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Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 127425 - 127353
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacata 86  Q
    |||||||||||||||| | | | |||||||| || ||||||||||||||||| |||||||| |||| ||||||    
T  127425 tatcttcaccatcttcgtcagtgatcaatatctttagtccttctctggatgttactcttgaaacaataacata 127353  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 1394158 - 1394066
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaata 106  Q
    |||||||||||||||||| | | |||||||| || ||||||||||| |||||||||||||| |||| |||||| || ||||| || |||||||    
T  1394158 tatcttcaccatcttcatcagtgatcaatatatttagtccttctctagatgtaactcttgaaacaataacatacaactgtccgtgagaaaata 1394066  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 15298223 - 15298163
Alignment:
Q  12 taatatcttcaccatcttcattatta-tcaatattttcagtccttctctggatgtaactct 71  Q
    ||||||||||||||||||||| | || ||||||| |||||||||||||| |||||||||||    
T  15298223 taatatcttcaccatcttcataagtaatcaatatattcagtccttctctagatgtaactct 15298163  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 7018481 - 7018394
Alignment:
Q  15 tatcttcaccatcttcatta-ttatcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtga 101  Q
    |||||||||||||||||| | |||||| ||| ||||  | |||||||||||||||| | || ||||| |||| |||||||||||||||    
T  7018481 tatcttcaccatcttcatcaattatcagtatcttcaaccattctctggatgtaactttggaaacaaccacatgtaattgtccatgtga 7018394  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 23307348 - 23307376
Alignment:
Q  156 ccttgactcttgttaatagtcatggcaaa 184  Q
    |||||||||||||||||||||||||||||    
T  23307348 ccttgactcttgttaatagtcatggcaaa 23307376  T

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Target: scaffold0059 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 71289 - 71384
Alignment:
Q  15 tatcttcaccatcttcattatt-atcaatattttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacag 109  Q
    |||||||||||||||||| | | |||||||| || |||| |||||||||||| |||||||| |||| |||||| || ||||| || ||||||||||    
T  71289 tatcttcaccatcttcatcagtgatcaatatctttagtctttctctggatgttactcttgaaacaataacatacaactgtccgtgagaaaatacag 71384  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 25595 - 25534
Alignment:
Q  43 attttcagtccttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaa 104  Q
    ||||||| ||| |||||||| ||||||||||| |   ||||||||||||| |||||||||||    
T  25595 attttcaatccatctctggaggtaactcttgatattgcaacatataattgaccatgtgaaaa 25534  T

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