View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18580_low_31 (Length: 330)
Name: NF18580_low_31
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 45386608 - 45386453
Alignment:
| Q |
17 |
agagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45386608 |
agagaaagcagagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaa |
45386509 |
T |
|
| Q |
117 |
aaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45386508 |
aaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
45386453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 45390977 - 45390822
Alignment:
| Q |
17 |
agagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaa |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45390977 |
agagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcatagaaaggttgagcttctttctccgatcccaattgctcctgaggaggaa |
45390878 |
T |
|
| Q |
117 |
aaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
172 |
Q |
| |
|
||| || |||||||| |||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
45390877 |
aaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
45390822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 45386375 - 45386310
Alignment:
| Q |
251 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacagg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45386375 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacagg |
45386310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 45390734 - 45390672
Alignment:
| Q |
253 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgca |
312 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45390734 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgca |
45390672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 734585 - 734430
Alignment:
| Q |
17 |
agagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaa |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
734585 |
agagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcataggaaggttgagcttctttctccgatcccaattgctcctgaggaggaa |
734486 |
T |
|
| Q |
117 |
aaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
172 |
Q |
| |
|
||| || |||||||| |||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
734485 |
aaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
734430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 734341 - 734279
Alignment:
| Q |
253 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgca |
312 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
734341 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgca |
734279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 40578022 - 40577944
Alignment:
| Q |
21 |
aaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaa |
99 |
Q |
| |
|
||||| || |||||||||||| | || || ||| ||| ||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
40578022 |
aaagcggatccattgaaggttcttgaaagagttcagaggaagagtcatagacaagttgagcttctttctccgatcccaa |
40577944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University