View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_32 (Length: 328)
Name: NF18580_low_32
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 76 - 310
Target Start/End: Complemental strand, 24371326 - 24371092
Alignment:
| Q |
76 |
tacaattcggttagattggattcaatgcattataccaaactttattcttgtattgcaaagaacatccggattcggagttcgaccacacctatactcttca |
175 |
Q |
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| T |
24371326 |
tacaattcggttagattggattcaatgcatcataccaaactttattcttgtattgcaaagaacatccggattcggagttcgaccacacctatactcttca |
24371227 |
T |
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| Q |
176 |
atgatgtatgaaacctgataaacagttcaataagtcaaatgtgagacagagcctcaacagcgaaattgaaaatagatcatattcattaacttaggccata |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24371226 |
atgatgtatgaaacctgataaacagttcaataagtcaaatgcgagacagagcctcaacagcgaaattgaaaatagaacatattcattaacttaggccata |
24371127 |
T |
|
| Q |
276 |
tttggataaatagtttaattaaacgcctatcatat |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24371126 |
tttggataaatagtttaattaaacgcctatcatat |
24371092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 33788177 - 33788131
Alignment:
| Q |
264 |
acttaggccatatttggataaatagtttaattaaacgcctatcatat |
310 |
Q |
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||||||| |||| ||||||||||||||||||||| ||| |||||||| |
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| T |
33788177 |
acttaggtcatagttggataaatagtttaattaagcgcttatcatat |
33788131 |
T |
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