View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_35 (Length: 321)
Name: NF18580_low_35
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_35 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 13270694 - 13271008
Alignment:
| Q |
7 |
gaaccaattatttcccctgaagctgtacttatactcatcttttgtgaagactcagcacttgtagtagcagtgcctaaaatatccaaggttagaaaatatg |
106 |
Q |
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| T |
13270694 |
gaaccaattatttcccctgaagctggacttatactcatcttttttgaagactcagcacttgtagtagcagtgcctaaaatatccaaggttagaaaatatg |
13270793 |
T |
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| Q |
107 |
ataaactcatttgtaaaaaacaatgttaatagattgagaaatctttctaatatgtacactatgaccatagattatttcacgaaacaaatcaacttacctg |
206 |
Q |
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| T |
13270794 |
ataaactcatttgtataaaacaatgttaatagattgagaaatctttctaatatgtacactatgaccatagattatttcacgaaacaaatcaacttacctg |
13270893 |
T |
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| Q |
207 |
cgacagccagtttgtgagcatcgatattacttgtctcaacatcatttaatggaccattcgcacccgaagatgtatcaacacatgttgtagcatcttgtga |
306 |
Q |
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| T |
13270894 |
cgacagccagtttgtgagcatcgatattacttgtctcaacatcatttaatggacctttcgcacccgaagatgtatcaacacatgttgtagcatcttgtga |
13270993 |
T |
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| Q |
307 |
tttgtgaacttgatc |
321 |
Q |
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| T |
13270994 |
tttgtgaacttgatc |
13271008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 13269183 - 13269326
Alignment:
| Q |
68 |
tagtagcagtgcctaaaatatccaaggttagaaaatatgataaactcatttgtaaaaaacaatgttaatagattgagaaatctttctaatatgtacacta |
167 |
Q |
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| T |
13269183 |
tagtagcagtgcctaaagtatccaaggttagaatg-attataaactcatttctataaaacaatgttaaaaggttaagaaatcttgctaatgtgtacacta |
13269281 |
T |
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| Q |
168 |
-tgaccatagattatttcacgaaacaaatcaacttacctgcgaca |
211 |
Q |
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| T |
13269282 |
ttgaccataaattatttagtgaaacaaatcaatatacctgtgaca |
13269326 |
T |
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