View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_36 (Length: 319)
Name: NF18580_low_36
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 17137760 - 17137471
Alignment:
| Q |
19 |
caaagtgctggtatttatcttcaaaggtcatggattatactcttcaccacttgcatacttatcttgcctattcatatctatgcaaccccaatcttaaaat |
118 |
Q |
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| T |
17137760 |
caaagtgctggtatttatcttcaaaggtcatggattatactcttcaccacttgcatactaatcttgcctattcatatatatgcaaccccaatcttaaaat |
17137661 |
T |
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| Q |
119 |
ttcttggccaagaacaagaaatagctgatctagctggcaaatatgcaattcaaataattccttgcatgttttcctttgctatcaatttacccatcaagaa |
218 |
Q |
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| T |
17137660 |
ttcttggccaagaacaagaaatagctgatctagctggcaaatatgcaattcaaataattccttgcatgttttcctttgctatcaatttacccatcaagaa |
17137561 |
T |
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| Q |
219 |
atttcttcaagcacaatgcaaagttaatgttattatgtgcatatcactattgtttttactcatacaaaatggtctactttacatcttcat |
308 |
Q |
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| T |
17137560 |
atttcttcaagcacaatgcaaagttaatgttattatgtgcatatcactattgtttttactcatacaaaatggtctactttacatcttcat |
17137471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 17151061 - 17150772
Alignment:
| Q |
19 |
caaagtgctggtatttatcttcaaaggtcatggattatactcttcaccacttgcatacttatcttgcctattcatatctatgcaaccccaatcttaaaat |
118 |
Q |
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|||| ||||||||||||| ||||||| ||| | |||||||||||||||||||| ||||| | ||||| ||| |||| |||||||| ||||||||||||| |
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| T |
17151061 |
caaaatgctggtatttatgttcaaagatcaagtattatactcttcaccacttgtatactcctattgccaattaatatatatgcaactccaatcttaaaat |
17150962 |
T |
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| Q |
119 |
ttcttggccaagaacaagaaatagctgatctagctggcaaatatgcaattcaaataattccttgcatgttttcctttgctatcaatttacccatcaagaa |
218 |
Q |
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| T |
17150961 |
ttcttggccaagaacaagaaatagctgacctagctggcaaatatgctattcttataattccatacatgttttccagtgctatccatttacccatccagaa |
17150862 |
T |
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| Q |
219 |
atttcttcaagcacaatgcaaagttaatgttattatgtgcatatcactattgtttttactcatacaaaatggtctactttacatcttcat |
308 |
Q |
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|||||||||||||||| | ||||||| |||||||||| |||| || | || | || || |||||||||||||||||||| |||||||| |
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| T |
17150861 |
atttcttcaagcacaaagtgaagttaaagttattatgtacatagcaattgtgatattgctaatacaaaatggtctactttatatcttcat |
17150772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 17169613 - 17169323
Alignment:
| Q |
19 |
caaagtgctggtatttatcttcaaaggtcatggattatactcttcaccacttgcatacttatcttgcctattcatatctatgcaaccccaatcttaaaat |
118 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||| | | |||||||| |||||||||||| |
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| T |
17169613 |
caaaatgctggtatttatcttcaaaggtcatggatagtactcttcaccacttgtatactcctcttgccaattcttctatatgcaactccaatcttaaaac |
17169514 |
T |
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| Q |
119 |
ttcttggccaagaacaagaaatagctgatctagctggcaaatatgcaattcaaataattccttgcatgttttcctttgctatcaatttacccatcaagaa |
218 |
Q |
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||||||| |||||| |||| ||||| ||||| || || |||||||| |||| | ||||||| | |||||||||||| || ||||||||||| || ||| |
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| T |
17169513 |
ttcttggtcaagaaaaagagatagccgatcttgccggaaaatatgctattctactaattccctacatgttttccttcgccgtcaatttacccctcgtgaa |
17169414 |
T |
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| Q |
219 |
atttcttcaagcacaatgcaaagttaatgttattatgtgcatatcactattgtttttactcatacaaaatggtctactttacatcttcatc |
309 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||| || | | |||||||| ||||||||||||||||||||||||||| |
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| T |
17169413 |
gtttcttcaagcacaaagcaaagttaatgttattatgtacatagcaatggttacattactcatccaaaatggtctactttacatcttcatc |
17169323 |
T |
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