View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_37 (Length: 315)
Name: NF18580_low_37
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 45976916 - 45976616
Alignment:
| Q |
7 |
tccaagaatataactatggcatcacagattcnnnnnnngcacttgaatctgaaatacatgtgaaaattggaagatcaatattcatggtaaaaatgtaagt |
106 |
Q |
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| T |
45976916 |
tccaagaatataactatggcatcacagattctttctttgcacttgaatctgaaatacatgtgaaaattgtaagatcaaaattcatggtaaaaatgtaagt |
45976817 |
T |
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| Q |
107 |
acctaaataaggatgagtttcaggatcaaaagaactttggtcaaaacaaataggtggttgagaacttgcttcatcatccatataaggtgactgtaattcc |
206 |
Q |
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| T |
45976816 |
acctaaataaggatgagtttcaggatcaaaagaactttggtcaaaacaaataggtggttgagaacttgcttcatcatccatataaggtgactgtaattcc |
45976717 |
T |
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| Q |
207 |
ttaaaatgagaaatttgaaacggcgaaggaatagaagaaacatatgctccattaatggaggaatctgggccatggacaattcctggttccccgacaaggt |
306 |
Q |
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| T |
45976716 |
ttaaaatgagaaatttgaaacggcgaaggaatagaagaaacatatgctccattaatggaggaatctgggccatggacaattcctggttccccgacaaggt |
45976617 |
T |
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| Q |
307 |
c |
307 |
Q |
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| T |
45976616 |
c |
45976616 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 28051650 - 28051714
Alignment:
| Q |
210 |
aaatgagaaatttgaaacggcgaaggaatagaagaaacatatgctccattaatggaggaatctgg |
274 |
Q |
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| T |
28051650 |
aaatgagaaatttgaaatggagaaggtgttgaagacacatatgctccattaattgaggaatctgg |
28051714 |
T |
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