View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_39 (Length: 312)
Name: NF18580_low_39
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 9402785 - 9402507
Alignment:
| Q |
23 |
ggggaagcaacgacgtccaaactagatttagatttttatttctattcatgctagaaatgtggttaataatatgcaatttaacgattaataaagtagtcaa |
122 |
Q |
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| T |
9402785 |
ggggaagcaacgacatccaaactagatttagatttttatttctattcatgctaaaaatgtggttaataatatacaatttaacgattaataaagtagtcaa |
9402686 |
T |
|
| Q |
123 |
attag----nnnnnnngaaggaaaagtagtcaaattagttaattacgccactcaatttttgtgtgataaaagttctcctctatatttnnnnnnnnnnnnn |
218 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9402685 |
attagtttttttttttgaaggaaaagtagtcaaattagttaattacgccactcaatttttgtgtgataaaagttctcctctatatttaaaaaataaaagt |
9402586 |
T |
|
| Q |
219 |
nnnnnngtattgcacaccgtaaatactttatacggttaacaatgtagatgtactgtatttgtgtcaattatgtgtgttc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9402585 |
aaaaaagtattgcacaccgtaaatactttatacggttaacaatgtagatgtactgtatttgtgtcaattatgtgtgttc |
9402507 |
T |
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