View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_4 (Length: 645)
Name: NF18580_low_4
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 21559311 - 21559020
Alignment:
| Q |
1 |
atcatgttcacttgtttattcaaatgaaagggacgaaaataattgagtgctatatttgnnnnnnnatatgaagaatacgacaagccactttgcaaaagtt |
100 |
Q |
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| T |
21559311 |
atcatgttcacttgtttattcaaatgaaagggacgaaaataattgagtgctatatttgtttttttatatgaagaacacgacaagccactttgcaaaagtt |
21559212 |
T |
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| Q |
101 |
atgcacacatatacatgcttgaaaattgatatctattacgaaccacattttctaggtttaaagttagtcaatatatacattaatttgagtccatgacgga |
200 |
Q |
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| T |
21559211 |
atgcacacatatacatgcttgaaaattgatatctattacgaaccacattttctaggtttaaagttagtcaatatatacattaatttgagtccatgacgga |
21559112 |
T |
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| Q |
201 |
acaattttatttgattagatgtatccaatttctctttttctcatctttaccattacttgatgagagggtttatttagctaaaatatgtcaca |
292 |
Q |
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| T |
21559111 |
acaattttatttgattagatgtatccaatttctctttttctcatctttaccattacttgatgagagggtttatttagctaaaatatgtcaca |
21559020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 354 - 627
Target Start/End: Complemental strand, 21558958 - 21558682
Alignment:
| Q |
354 |
atcttgttgtgacgaattaaaacaatgcacgaaccattttgactctcaaagtgtattttcaatgnnnnnnnnnnn--actcaagattttcaatgttagat |
451 |
Q |
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| T |
21558958 |
atcttgttgtgacgaattaaaaccatgcacgaaccattttgactctcaaagtgtattttcaatgtttttttttttttactcaagattttcaatgttagat |
21558859 |
T |
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| Q |
452 |
aatatataattatcttcaaacaatcccc-ttaatgagtttcagactttaaaaagttgatatttaatttgaaaatttgatctcaatcataagctttttgca |
550 |
Q |
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| T |
21558858 |
aatatataattattttcaaacaatcccccttaatgagtttcagactttaaaaagttgatatataatttgaaaatttgatctcaatcataagctttttgca |
21558759 |
T |
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| Q |
551 |
gggaataaacgtctttattccaaattaattttaaataagtgatcttttaacttttactcactcttgcacgtcgtttc |
627 |
Q |
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| T |
21558758 |
gggaataaacgtctttattccaaattaattttaaataagtgatcttttaacttttactcactcttgcacgtcgtttc |
21558682 |
T |
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