View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_41 (Length: 309)

Name: NF18580_low_41
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_41
NF18580_low_41
[»] chr6 (4 HSPs)
chr6 (108-239)||(23155849-23155982)
chr6 (108-239)||(10198134-10198266)
chr6 (8-42)||(10198332-10198366)
chr6 (8-40)||(15338700-15338732)
[»] chr4 (2 HSPs)
chr4 (108-239)||(1863980-1864112)
chr4 (8-42)||(1864179-1864213)
[»] scaffold0073 (4 HSPs)
scaffold0073 (108-239)||(12539-12669)
scaffold0073 (8-42)||(12736-12770)
scaffold0073 (8-42)||(22615-22649)
scaffold0073 (160-193)||(22557-22590)
[»] chr7 (2 HSPs)
chr7 (108-239)||(7043706-7043836)
chr7 (8-42)||(7043903-7043937)
[»] scaffold0002 (5 HSPs)
scaffold0002 (108-239)||(313405-313535)
scaffold0002 (187-239)||(322147-322199)
scaffold0002 (187-239)||(328922-328974)
scaffold0002 (108-149)||(322084-322125)
scaffold0002 (108-149)||(328859-328900)
[»] chr2 (3 HSPs)
chr2 (108-239)||(40484494-40484624)
chr2 (187-239)||(24254005-24254057)
chr2 (108-148)||(24254785-24254825)
[»] scaffold0029 (2 HSPs)
scaffold0029 (187-239)||(135641-135693)
scaffold0029 (108-149)||(135578-135619)
[»] scaffold0225 (1 HSPs)
scaffold0225 (186-237)||(6790-6839)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 23155849 - 23155982
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataatnnnnnnnccattaaaaatgcactaatatgattaacataatat--gattttgtttctg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  23155849 ccataattaactttgttgactttgaaacaaataaaggaataataaaaaaaccattaaaaatgcactaatatgattaacataatatatgattttgtttctg 23155948  T
Q  206 atttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||||||||| |||||||||||||||||    
T  23155949 atttcaaatgtgtgactttttgaaaattaatgga 23155982  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 10198266 - 10198134
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataatnnnnnnn-ccattaaaaatgcactaatatgattaacataatatgattttgtttctga 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10198266 ccataattaactttgttgactttgaaacaaaaaaaggaataataaaaaaaaccattacaaatgcactaatatgattaacataatatgattttgtttctga 10198167  T
Q  207 tttcaaatgtgtgacattttgaaaattaatgga 239  Q
    ||||||||||||||| |||||||||||||||||    
T  10198166 tttcaaatgtgtgactttttgaaaattaatgga 10198134  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 10198366 - 10198332
Alignment:
Q  8 cgaataatatatattcatgtaattcctcattagcc 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  10198366 cgaaaaatatatattcatgtaattcctcattagcc 10198332  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 15338732 - 15338700
Alignment:
Q  8 cgaataatatatattcatgtaattcctcattag 40  Q
    |||| ||||||||||||||||||||||||||||    
T  15338732 cgaaaaatatatattcatgtaattcctcattag 15338700  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 1864112 - 1863980
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataatnnnnnnn-ccattaaaaatgcactaatatgattaacataatatgattttgtttctga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1864112 ccataattaactttgttgactttgaaacaaataaaggaataataaaaaaaaccattaaaaatgcactaatatgattaaaataatatgattttgtttctga 1864013  T
Q  207 tttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||| |||| |||||||||||||||||    
T  1864012 tttcaaatgtatgactttttgaaaattaatgga 1863980  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 1864213 - 1864179
Alignment:
Q  8 cgaataatatatattcatgtaattcctcattagcc 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  1864213 cgaaaaatatatattcatgtaattcctcattagcc 1864179  T

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Target: scaffold0073 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 12669 - 12539
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataatnnnnnnnccattaaaaatgcactaatatgattaacataatatgattttgtttctgat 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12669 ccataattaactttgttgactttcaaacaaataaaggaataataaaaaaatcattaaaa-tgcactaatatgattaacataatatgattttgtttctgat 12571  T
Q  208 ttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||||||| |||||||||||||||||    
T  12570 ttcaaatgtgtgactttttgaaaattaatgga 12539  T

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Target: scaffold0073; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 12770 - 12736
Alignment:
Q  8 cgaataatatatattcatgtaattcctcattagcc 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  12770 cgaaaaatatatattcatgtaattcctcattagcc 12736  T

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Target: scaffold0073; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 22649 - 22615
Alignment:
Q  8 cgaataatatatattcatgtaattcctcattagcc 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  22649 cgaaaaatatatattcatgtaattcctcattagcc 22615  T

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Target: scaffold0073; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 22590 - 22557
Alignment:
Q  160 attaaaaatgcactaatatgattaacataatatg 193  Q
    ||||||||||||||||||||||||||| ||||||    
T  22590 attaaaaatgcactaatatgattaacacaatatg 22557  T

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Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 7043836 - 7043706
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataatnnnnnnnccattaaaaatgcactaatatgattaacataatatgattttgtttctgat 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7043836 ccataattaactttgttgactttcaaacaaataaaggaataataaaaaaatcattaaaa-tgcactaatatgattaacataatatgattttgtttctgat 7043738  T
Q  208 ttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||||||| |||||||||||||||||    
T  7043737 ttcaaatgtgtgactttttgaaaattaatgga 7043706  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 7043937 - 7043903
Alignment:
Q  8 cgaataatatatattcatgtaattcctcattagcc 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  7043937 cgaaaaatatatattcatgtaattcctcattagcc 7043903  T

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Target: scaffold0002 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 313405 - 313535
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataatnnnnnnnc-cattaaaaatgcactaatatgattaacataatatgattttgtttctga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||  |||||||||||||||||||||||||||    
T  313405 ccataattaactttgttgactttgaaacaaataaaggaataataaaaataatcattaaaaatgcactaata--attaacataatatgattttgtttctga 313502  T
Q  207 tttcaaatgtgtgacattttgaaaattaatgga 239  Q
    ||||||||||||||| |||| ||||||||||||    
T  313503 tttcaaatgtgtgactttttaaaaattaatgga 313535  T

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Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 322147 - 322199
Alignment:
Q  187 taatatgattttgtttctgatttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  322147 taatatgattttgtttctgatttcaaatgtttgactttttgaaaattaatgga 322199  T

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Target: scaffold0002; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 328922 - 328974
Alignment:
Q  187 taatatgattttgtttctgatttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  328922 taatatgattttgtttctgatttcaaatgtttgactttttgaaaattaatgga 328974  T

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Target: scaffold0002; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 322084 - 322125
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataa 149  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  322084 ccataattaactttgttgactttgaaacaaataaaggaataa 322125  T

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Target: scaffold0002; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 328859 - 328900
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataa 149  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  328859 ccataattaactttgttgactttgaaacaaataaaggaataa 328900  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 40484494 - 40484624
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataatnnnnnnnc-cattaaaaatgcactaatatgattaacataatatgattttgtttctga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||  |||||||||||||||||||||||||||    
T  40484494 ccataattaactttgttgactttgaaacaaataaaggaataataaaaaaaatcattaaaaatgcactaata--attaacataatatgattttgtttctga 40484591  T
Q  207 tttcaaatgtgtgacattttgaaaattaatgga 239  Q
    ||||||||||||||| |||| ||||||||||||    
T  40484592 tttcaaatgtgtgactttttaaaaattaatgga 40484624  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 24254057 - 24254005
Alignment:
Q  187 taatatgattttgtttctgatttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  24254057 taatatgattttgtttctaatttcaaatgtgtgactttttgaaaattaatgga 24254005  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 24254825 - 24254785
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaata 148  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  24254825 ccataattaactttgttgactttgaagcaaataaaggaata 24254785  T

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Target: scaffold0029 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 135641 - 135693
Alignment:
Q  187 taatatgattttgtttctgatttcaaatgtgtgacattttgaaaattaatgga 239  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  135641 taatatgattttgtttctgatttcaaatgtttgactttttgaaaattaatgga 135693  T

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Target: scaffold0029; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 135578 - 135619
Alignment:
Q  108 ccataattaactttgttgactttgaaacaaataaaggaataa 149  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  135578 ccataattaactttgttgactttgaaacaaataaaggaataa 135619  T

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Target: scaffold0225 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 6790 - 6839
Alignment:
Q  186 ataatatgattttgtttctgatttcaaatgtgtgacattttgaaaattaatg 237  Q
    ||||||||||||||||||||||||||||  |||||  |||||||||||||||    
T  6790 ataatatgattttgtttctgatttcaaa--tgtgattttttgaaaattaatg 6839  T

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