View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_42 (Length: 299)
Name: NF18580_low_42
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 26314657 - 26314776
Alignment:
| Q |
165 |
atatagatagatattagatatacaccttgcacatgtttggagggcacaaattacatgtgtgaggaggcttgttgagatcatggaaaggcaaaattctcaa |
264 |
Q |
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| T |
26314657 |
atatagatagatattagatatacaccttgcacatgtttggagggcacaaattacatgtgtgaggaggcttgttgagatcatagaaaggcaaaattctcaa |
26314756 |
T |
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| Q |
265 |
tcttccttcttcatcaacat |
284 |
Q |
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| T |
26314757 |
tcttccttcttcatcaacat |
26314776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 26314441 - 26314565
Alignment:
| Q |
2 |
caccaagatagataaatcttttatttttctcacttgatatagagtcttggattctctttatgattagtccctataatcatatgatttagaatatgaattt |
101 |
Q |
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| T |
26314441 |
caccaagatagataaatcttttatttttctcacttgatatagagtcttggattctctttatgattagtccctgtaatgatttgatgtagaataagaactt |
26314540 |
T |
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| Q |
102 |
ggcatagaacattatatatatgact |
126 |
Q |
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| T |
26314541 |
ggcataaaacattatatacatgact |
26314565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 43110217 - 43110304
Alignment:
| Q |
186 |
acaccttgcacatgtttggagggcacaaattacatgtgtgaggaggcttgttgagatcatggaaaggcaaaattctcaatcttccttc |
273 |
Q |
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| T |
43110217 |
acaccttgcacatgtttggaggacacagattacatttgtgaggaggcttattgagatcatggtaaggcaaaattctcaaccttccttc |
43110304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 43109392 - 43109503
Alignment:
| Q |
4 |
ccaagatagataaatcttttatttttctcacttgatatagagtcttggattctctttatgattagtccctataatcatatgatttagaatatgaatttgg |
103 |
Q |
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| T |
43109392 |
ccaagatagataaaccttttattctcttcacatgatatagactcttggattctatttatgattagaccctgtaatgatatgatatggaataagaacttgg |
43109491 |
T |
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| Q |
104 |
catagaacatta |
115 |
Q |
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||||||| |||| |
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| T |
43109492 |
catagaatatta |
43109503 |
T |
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