View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_44 (Length: 298)

Name: NF18580_low_44
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_44
NF18580_low_44
[»] chr4 (4 HSPs)
chr4 (99-283)||(6136504-6136687)
chr4 (84-263)||(17404478-17404656)
chr4 (112-258)||(2947254-2947400)
chr4 (204-283)||(2947175-2947254)
[»] chr2 (6 HSPs)
chr2 (86-282)||(19569985-19570181)
chr2 (113-283)||(24579149-24579320)
chr2 (139-283)||(1645450-1645594)
chr2 (87-279)||(3573240-3573446)
chr2 (114-174)||(37078727-37078786)
chr2 (235-283)||(37080832-37080880)
[»] chr1 (5 HSPs)
chr1 (99-283)||(2900986-2901163)
chr1 (87-283)||(28539044-28539243)
chr1 (180-279)||(36848269-36848368)
chr1 (87-153)||(23970634-23970700)
chr1 (99-164)||(27909039-27909104)
[»] chr3 (1 HSPs)
chr3 (112-283)||(9021179-9021350)
[»] chr5 (5 HSPs)
chr5 (84-282)||(21714851-21715048)
chr5 (84-282)||(21788766-21788963)
chr5 (84-282)||(13501828-13502024)
chr5 (239-283)||(15022696-15022740)
chr5 (150-283)||(15005118-15005240)
[»] chr8 (5 HSPs)
chr8 (99-281)||(15152348-15152528)
chr8 (113-283)||(19443179-19443345)
chr8 (113-283)||(19579330-19579498)
chr8 (87-137)||(19437242-19437292)
chr8 (87-137)||(19573391-19573441)
[»] chr7 (2 HSPs)
chr7 (87-221)||(4633112-4633246)
chr7 (117-200)||(29676790-29676873)
[»] chr6 (2 HSPs)
chr6 (87-283)||(20725791-20725987)
chr6 (99-147)||(14873937-14873985)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 99 - 283
Target Start/End: Complemental strand, 6136687 - 6136504
Alignment:
Q  99 aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaatta 198  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  6136687 aaattataggg-tactacaaagttaaaactaataaatgatgtgactaaacgaaatataaaataaaatcaggtaactgcatgtacaaaaaaatattaatta 6136589  T
Q  199 tatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    |||| |||||||||| ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  6136588 tatctataattttagtaactaaaccgacgcgtcataagctaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 6136504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 84 - 263
Target Start/End: Original strand, 17404478 - 17404656
Alignment:
Q  84 tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtac- 182  Q
    |||||||||||||   ||||| | ||| ||||||||||||||| |||||||||| || ||||||  |||||||||| ||||||||| |||| ||| |||     
T  17404478 tgttagttgctgac--aattacaagggcactacaaagtcaaaactaataaatgacgttactaaattaaatataaaacaaaatcagtcaactacatttacc 17404575  T
Q  183 aaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattga 263  Q
    ||| ||||||||||||  ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||    
T  17404576 aaaaaaatattaattacgtccataattttagcaactaaaccgatgagtcatgagtgaaaaacaagtgaataatctaattga 17404656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 2947400 - 2947254
Alignment:
Q  112 actacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataatttt 211  Q
    |||||||||| |||| || |||||||  ||| |||| ||||||||||||||||||||| |||| ||||||| || || |||||||||  |||||||||||    
T  2947400 actacaaagttaaaactagtaaatgacatgattaaatgaaatataaaataaaatcagtcaactacatgtaccaaaaattattaattacgtccataatttt 2947301  T
Q  212 agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatcta 258  Q
    |||||| |||     | ||||| |||||||| |||||| ||||||||    
T  2947300 agcaaccaaattgttgagtcatgagtgaaaagcaagtggataatcta 2947254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 2947254 - 2947175
Alignment:
Q  204 ataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    |||||||||||||| ||||  | | ||||| |||||||| |||||| ||||| |||||||  ||||||||||||||||||    
T  2947254 ataattttagcaaccaaactgatgagtcatgagtgaaaagcaagtggataatgtaattgaatcactaaaattaaaataat 2947175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 19570181 - 19569985
Alignment:
Q  86 ttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaa 185  Q
    |||||||||||  |||||| || || |||||| |||||||| |||||||||| || |||||| ||||||||||||||||||||| |||| ||||||   |    
T  19570181 ttagttgctgacaaaattacagaggcactacacagtcaaaactaataaatgacgttactaaatgaaatataaaataaaatcagtcaactacatgtatcga 19570082  T
Q  186 caaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataa 282  Q
     ||||||||||||  ||||||||||||||||||||||  | | ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  19570081 aaaatattaattacgtccataattttagcaactaaacggatgagtcatgagtgaaaagaaagtgaataatctaattgaggcactaaaattaaaataa 19569985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 24579320 - 24579149
Alignment:
Q  113 ctacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaa-taaaatcagttaactgcatgtacaaacaaatattaattatatccataatttt 211  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||| |||||||| | |||| ||||||| || ||||||||| || ||| ||||||||    
T  24579320 ctacaaagtcaaaactaataattgacgtgattaaatgaaatataaaaataaaatcaatcaactacatgtaccaaaaaatattaactacatctataatttt 24579221  T
Q  212 agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    |||||||||||||| | ||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  24579220 agcaactaaacctatgagtcatgagtgaaaagcaaatgaattatctaattgaggcactaaaattaaaataat 24579149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 283
Target Start/End: Complemental strand, 1645594 - 1645450
Alignment:
Q  139 gtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtg 238  Q
    ||||||||| ||||||||||||||||| | | |||| |||||||||| |||||||||||| || |||||||||||||||| |||||||| ||||| |||     
T  1645594 gtgactaaatgaaatataaaataaaattactcaactacatgtacaaaaaaatattaattacattcataattttagcaacttaacctacgagtcatgagta 1645495  T
Q  239 aaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    |||| ||||||||| |||||||||||| ||||||||| |||||||    
T  1645494 aaaagcaagtgaattatctaattgaggtactaaaattgaaataat 1645450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 279
Target Start/End: Complemental strand, 3573446 - 3573240
Alignment:
Q  87 tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaat-----------cagttaactg 175  Q
    ||||||||||  ||||||  |||  |||||||||||| || |||||||||| ||||||||| ||||||||||| |||||           |||| ||||     
T  3573446 tagttgctgacgaaattacggggccactacaaagtcataactaataaatgacgtgactaaatgaaatataaaaaaaaataaaaaaaatatcagtcaacta 3573347  T
Q  176 catgtac---aaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaa 272  Q
    |||||||   ||| |||||||||||| |||| ||||||||||||||||| | |   || || ||||||||||||||||||||||||||| ||||| ||||    
T  3573346 catgtaccaaaaaaaaatattaattacatccgtaattttagcaactaaatcaatcagttatgagtgaaaaacaagtgaataatctaattcaggcaataaa 3573247  T
Q  273 attaaaa 279  Q
    |||||||    
T  3573246 attaaaa 3573240  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 37078727 - 37078786
Alignment:
Q  114 tacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaact 174  Q
    ||||||||||||| |||||||||| |||||| || |||||||| |||||||||||||||||    
T  37078727 tacaaagtcaaaactaataaatgacgtgact-aatgaaatatagaataaaatcagttaact 37078786  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 37080832 - 37080880
Alignment:
Q  235 agtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    |||||||| ||||| |||| |||||||| ||||||||||||||||||||    
T  37080832 agtgaaaagcaagtaaatagtctaattggggcactaaaattaaaataat 37080880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 99 - 283
Target Start/End: Complemental strand, 2901163 - 2900986
Alignment:
Q  99 aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaatta 198  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||| || | ||||||  || ||||||||||||    
T  2901163 aaattataggggcactacaaagtcaaaactaataaatgacgtgactaaatgaaatataaaataaaattagtcaattacatgtatcaaaaaatattaatta 2901064  T
Q  199 tatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
     ||||||||||||| ||||||||||        |||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  2901063 catccataattttaacaactaaacc-------aataagtgaaaaacaagtgaataatttaattgagatactaaaattaaaataat 2900986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 283
Target Start/End: Complemental strand, 28539243 - 28539044
Alignment:
Q  87 tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaat-----ataaaataaaatcagttaactgcatgta 181  Q
    ||||||||||  |||||| | ||| |||||||| ||||   ||||||||||| |||||||| |||||     |||||||||||||||| |||| ||||||    
T  28539243 tagttgctgacaaaattacaagggcactacaaactcaac--taataaatgatatgactaaatgaaatggattataaaataaaatcagtcaactacatgta 28539146  T
Q  182 caaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaata 281  Q
    | || |||||||||||| ||| |||||||||||||||||||| | | ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  28539145 ccaaaaaatattaattacatcaataattttagcaactaaaccaatgagtcatgagtgaaaagcaagtgaataatcaaattgaggcactaaaattaaaata 28539046  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 36848269 - 36848368
Alignment:
Q  180 tacaaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaa 279  Q
    |||||| ||||||||||||  || |||||||||||||||||||| ||| ||||  |||||||| |||||||||||||||||| || ||||||||||||||    
T  36848269 tacaaaaaaatattaattacgtcaataattttagcaactaaaccaacgagtcaggagtgaaaagcaagtgaataatctaattaagacactaaaattaaaa 36848368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 23970634 - 23970700
Alignment:
Q  87 tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaat 153  Q
    ||||||||||  |||||||||||| ||||||||||||||| ||||||||| ||||| |||| |||||    
T  23970634 tagttgctgacaaaattataggggcactacaaagtcaaaactaataaatggtgtgattaaatgaaat 23970700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 27909104 - 27909039
Alignment:
Q  99 aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaa 164  Q
    |||||| || || ||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  27909104 aaattacagaggcacttcaaagtcaaaactaataaatgacgtgactaaatgaaatataaaataaaa 27909039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 9021179 - 9021350
Alignment:
Q  112 actacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataatttt 211  Q
    ||||||||||| ||| |||||||||| |||| ||||  |||| |||||||||| |||| |||| ||||||| || |||||||||||| ||||||||||||    
T  9021179 actacaaagtctaaactaataaatgacgtgaataaataaaatgtaaaataaaaccagtcaactacatgtaccaaaaaatattaattacatccataatttt 9021278  T
Q  212 agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    |  | ||||||| | | ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9021279 aagagctaaaccgatgagtcatgagtgaaaagcaagtgaataatctaattgaggcactacaattaaaataat 9021350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 84 - 282
Target Start/End: Complemental strand, 21715048 - 21714851
Alignment:
Q  84 tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtaca 183  Q
    |||||||||||||  |||||||| || || ||||||||||||| |||||||||| |||| |||| ||||| ||||||||||||||| |||| ||| | |     
T  21715048 tgttagttgctgacaaaattataagg-tattacaaagtcaaaactaataaatgacgtgattaaatgaaatgtaaaataaaatcagtcaactacatatgcc 21714950  T
Q  184 aacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataa 282  Q
    || |||||||||||| || | |||||||| |||||||| | | | ||||| |||||| | |||||||||||||| ||||||||||| ||||||||||||    
T  21714949 aaaaaatattaattacattcgtaattttaacaactaaatcgatgagtcatgagtgaacagcaagtgaataatcttattgaggcactgaaattaaaataa 21714851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 84 - 282
Target Start/End: Complemental strand, 21788963 - 21788766
Alignment:
Q  84 tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtaca 183  Q
    |||||||||||||  |||||||| || || ||||||||||||| |||||||||| |||| |||| ||||| ||||||||||||||| |||| ||| | |     
T  21788963 tgttagttgctgacaaaattataagg-tattacaaagtcaaaactaataaatgacgtgattaaatgaaatgtaaaataaaatcagtcaactacatatgcc 21788865  T
Q  184 aacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataa 282  Q
    || |||||||||||| || | |||||||| |||||||| | | | ||||| |||||| | |||||||||||||| ||||||||||| ||||||||||||    
T  21788864 aaaaaatattaattacattcgtaattttaacaactaaatcgatgagtcatgagtgaacagcaagtgaataatcttattgaggcactgaaattaaaataa 21788766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 282
Target Start/End: Original strand, 13501828 - 13502024
Alignment:
Q  84 tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtaca 183  Q
    |||||||||||||  |||||| | || ||||| ||| |||||| ||||||||||  ||| |||| ||||||||||||||||| | | |||| ||| | |     
T  13501828 tgttagttgctgacaaaattacaagg-tactataaaatcaaaactaataaatgacatgattaaatgaaatataaaataaaataa-tcaactacatatgcc 13501925  T
Q  184 aacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataa 282  Q
    || |||||||||||| |||| |||||||| |||||||||| | | ||||| |||||| | |||||||||||||| |||||| |||| ||||||||||||    
T  13501926 aaaaaatattaattacatccgtaattttaacaactaaaccgatgagtcatgagtgaacagcaagtgaataatcttattgagacactgaaattaaaataa 13502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 15022696 - 15022740
Alignment:
Q  239 aaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||    
T  15022696 aaaagcaagtgaataatctaattgagacactaaaattaaaataat 15022740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 15005118 - 15005240
Alignment:
Q  150 aaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtg 249  Q
    |||||||||||||||||||| |||| ||||||| || ||||| ||  |    |||||| ||||||||||||||       | || ||| |||| ||||||    
T  15005118 aaatataaaataaaatcagtcaactacatgtaccaaaaaataatacgt----ccataagtttagcaactaaac-------tgatgagttaaaatcaagtg 15005206  T
Q  250 aataatctaattgaggcactaaaattaaaataat 283  Q
    ||||||||||||||| | ||||||||||||||||    
T  15005207 aataatctaattgagacgctaaaattaaaataat 15005240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 281
Target Start/End: Complemental strand, 15152528 - 15152348
Alignment:
Q  99 aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgta-caaacaaatattaatt 197  Q
    |||||||||||| |||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||| | |||| |||||| |||| ||| ||||||     
T  15152528 aaattataggggcactacaaagttaaaactaataaatgacgtgactaaatgaaatataaaataaaatcaatcaactacatgtaccaaaaaaagattaatc 15152429  T
Q  198 atatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaata 281  Q
    | |||||||||||||||||||||||  | | ||||| | ||   | |||||||||||||||||||  |||||||||||||||||    
T  15152428 acatccataattttagcaactaaacggatgagtcatgaatg---agcaagtgaataatctaattggagcactaaaattaaaata 15152348  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 19443345 - 19443179
Alignment:
Q  113 ctacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataatttta 212  Q
    |||||||||||||| |||||| ||| |||| ||||  |||||||||||||||||| | |||| ||||||| || |||||||||||| ||| |||||||||    
T  19443345 ctacaaagtcaaaactaataattgacgtgattaaataaaatataaaataaaatcaatcaactacatgtaccaa-aaatattaattacatctataatttta 19443247  T
Q  213 gcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
     ||||||||| || | ||||| |||||||| |   ||||| |||||||||| |||||||||||||||||||    
T  19443246 acaactaaacatatgagtcatgagtgaaaagc---tgaatgatctaattgaagcactaaaattaaaataat 19443179  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 19579498 - 19579330
Alignment:
Q  113 ctacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaata-ttaattatatccataatttt 211  Q
    |||||||||||||| |||||| ||| |||| ||||  |||||||||||||||||| | |||| ||||||| |  ||||| ||||||| ||| ||||||||    
T  19579498 ctacaaagtcaaaactaataattgacgtgattaaataaaatataaaataaaatcaatcaactacatgtaccacaaaatacttaattacatctataatttt 19579399  T
Q  212 agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
    | ||||||||| || | ||||| |||||||| |   ||||| |||||||||| |||||||||||||||||||    
T  19579398 aacaactaaacatatgagtcatgagtgaaaagc---tgaatgatctaattgaagcactaaaattaaaataat 19579330  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 19437292 - 19437242
Alignment:
Q  87 tagttgctgattaaattataggggtactacaaagtcaaaattaataaatga 137  Q
    ||||||||||  |||||| ||||| ||||||||||||||| ||||||||||    
T  19437292 tagttgctgacaaaattacaggggcactacaaagtcaaaaataataaatga 19437242  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 19573441 - 19573391
Alignment:
Q  87 tagttgctgattaaattataggggtactacaaagtcaaaattaataaatga 137  Q
    ||||||||||  |||||| ||||| ||||||||||||||| ||||||||||    
T  19573441 tagttgctgacaaaattacaggggcactacaaagtcaaaaataataaatga 19573391  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 4633112 - 4633246
Alignment:
Q  87 tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaac 186  Q
    |||||||| ||  ||||||||||| ||||  || |||||| ||| |||||| |||| |||| |||||||| ||||||||||||| | | ||||||| ||     
T  4633112 tagttgctaatggaattataggggcactaggaactcaaaactaacaaatgacgtgattaaatgaaatatagaataaaatcagttcattacatgtaccaaa 4633211  T
Q  187 aaatattaattatatccataattttagcaactaaa 221  Q
    |||||||||||| || |||||||||||||||||||    
T  4633212 aaatattaattacattcataattttagcaactaaa 4633246  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 29676790 - 29676873
Alignment:
Q  117 aaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattata 200  Q
    |||||||||| ||||||||||  ||| |||| ||||||||||||||||||| |||||| ||||||| || ||||||| ||||||    
T  29676790 aaagtcaaaactaataaatgacatgattaaatgaaatataaaataaaatcacttaactacatgtaccaaaaaatattgattata 29676873  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 283
Target Start/End: Original strand, 20725791 - 20725987
Alignment:
Q  87 tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaac 186  Q
    ||||||||||  |||||| || || ||| |||| |||||| |||||||| | ||||||||| |||||||||||| |||||||| |||  ||||||         
T  20725791 tagttgctgacaaaattacagaggcactgcaaactcaaaactaataaataacgtgactaaatgaaatataaaatgaaatcagtcaacgacatgtaatttt 20725890  T
Q  187 aaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat 283  Q
       |  |||||| ||| |||||||||||||||||| | | | ||||| || ||||| ||| |||||||||||||||||||| |||||||||||||||    
T  20725891 tttttctaattacatcaataattttagcaactaaatcgatgagtcatgagggaaaagcaaatgaataatctaattgaggcaataaaattaaaataat 20725987  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 14873937 - 14873985
Alignment:
Q  99 aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaa 147  Q
    |||||||||||| ||||||||||| ||| |||||||||| |||| ||||    
T  14873937 aaattataggggcactacaaagtcgaaactaataaatgacgtgagtaaa 14873985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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