View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_46 (Length: 294)

Name: NF18580_low_46
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_46
NF18580_low_46
[»] chr2 (1 HSPs)
chr2 (13-276)||(21264315-21264578)
[»] chr1 (3 HSPs)
chr1 (13-276)||(47804887-47805150)
chr1 (30-92)||(2701166-2701228)
chr1 (19-115)||(52681926-52682022)
[»] chr3 (2 HSPs)
chr3 (13-273)||(6847458-6847718)
chr3 (19-115)||(33720426-33720522)
[»] chr7 (2 HSPs)
chr7 (17-276)||(38460067-38460326)
chr7 (61-127)||(10670611-10670677)
[»] chr5 (1 HSPs)
chr5 (138-276)||(18043384-18043522)
[»] chr6 (1 HSPs)
chr6 (27-276)||(522506-522755)
[»] scaffold0013 (1 HSPs)
scaffold0013 (30-92)||(15953-16015)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 21264315 - 21264578
Alignment:
Q  13 gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactt 112  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21264315 gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactt 21264414  T
Q  113 tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21264415 tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcaaaaac 21264514  T
Q  213 tttttcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt 276  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21264515 tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgt 21264578  T

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Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 47804887 - 47805150
Alignment:
Q  13 gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactt 112  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47804887 gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactt 47804986  T
Q  113 tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47804987 tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcaaaaac 47805086  T
Q  213 tttttcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt 276  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47805087 tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgt 47805150  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 2701228 - 2701166
Alignment:
Q  30 tgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacat 92  Q
    |||||||||||||| ||||||  |||  |||| |||||||||||||||||||| || ||||||    
T  2701228 tgtgacaacaaggcagctataagcatagctcataatccagttcaacatgatcgtacaaaacat 2701166  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 52682022 - 52681926
Alignment:
Q  19 tgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttat 115  Q
    ||||| ||| ||||||||||||||| || |||   ||  |||| ||||||||||||||||||||||| || ||| | ||| | ||||| ||||||||    
T  52682022 tgaaattatattgtgacaacaaggccgcaataagtatagctcataatccagttcaacatgatcgaacaaagcatattgaaatcgatcgtcactttat 52681926  T

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Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 6847458 - 6847718
Alignment:
Q  13 gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactt 112  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||    
T  6847458 gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcggtt 6847557  T
Q  113 tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  6847558 tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgagcaccagttagcagatatactcacaaaagccgtatgcagcaaaaac 6847657  T
Q  213 tttttcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggag 273  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6847658 tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggag 6847718  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 33720426 - 33720522
Alignment:
Q  19 tgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttat 115  Q
    ||||| ||| ||||||||||||||| || |||   ||  |||| ||||||||||||||||||||||| || ||| | ||| | ||||| ||||||||    
T  33720426 tgaaattatattgtgacaacaaggccgcaataagtatagctcataatccagttcaacatgatcgaacaaagcatattgaaatcgatcgtcactttat 33720522  T

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Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 38460326 - 38460067
Alignment:
Q  17 gatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttatt 116  Q
    |||||| || ||||||||||||||| |||| || || ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460326 gatgaatctgttttgtgacaacaagtctgcaatcgaaatttcccataatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactttatt 38460227  T
Q  117 aaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||| |||| |    
T  38460226 aaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaagatcaattagcagatatactcacaaaagctgtatgtagcagagacttct 38460127  T
Q  217 tcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt 276  Q
    |||||||||||||||||||||| ||||   |||| | |||||||||||||||||||||||    
T  38460126 tcaactcacttgacaagttgggtattcgagatctctatgcaccaacttgagggggagtgt 38460067  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 10670677 - 10670611
Alignment:
Q  61 acaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttattaaacaaaatct 127  Q
    |||||||||| ||||||||||| || ||||||||||| |||||||| || ||||| ||| |||||||    
T  10670677 acaatccagtgcaacatgatcgtactaaacatgtggaggtagatcgacattttataaaagaaaatct 10670611  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 18043522 - 18043384
Alignment:
Q  138 ataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttttcaactcacttgacaagttgg 237  Q
    |||||||| |||||||||||||||||| | || || ||| ||||||||||||||||||  ||||| | |||| |||||| |||||||||||| |||||||    
T  18043522 ataattcagtttccatttgttaaatctaaagatcaattatcagatatactcacaaaagttgtatgtaccagagacttttacaactcacttgataagttgg 18043423  T
Q  238 gcattcagaatctttgtgcaccaacttgagggggagtgt 276  Q
    |||||||  |||| ||||||||||||||||||| |||||    
T  18043422 gcattcaagatctctgtgcaccaacttgaggggaagtgt 18043384  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 522755 - 522506
Alignment:
Q  27 ttttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttattaaacaaaatc 126  Q
    |||||||| || |||||||| || |  ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||||||| || || || ||| ||||||    
T  522755 ttttgtgataataaggctgccatcgctatttcccacaacccagtgcaacacgatcgtactaaacatgtggaggtagatcgacatttcatcaaagaaaatc 522656  T
Q  127 tggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttttcaactcact 226  Q
    | ||   |||| || ||  |||||| |||||||| ||||| || ||||| ||||| || || ||||| || || |  |||| |   ||   || ||||||    
T  522655 ttgaaggcaaagtagttagatttccttttgttaagtctgaagatcagttggcagacatgcttacaaaggcagtttctagcaaagttttccacagctcact 522556  T
Q  227 tgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt 276  Q
    ||||||||| |||||| |  || | | |||||||||||||||||||||||    
T  522555 tgacaagttaggcattaatgatatctatgcaccaacttgagggggagtgt 522506  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 15953 - 16015
Alignment:
Q  30 tgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacat 92  Q
    |||||||||||||| ||||||  |||  |||| |||||||||||||||||||| || ||||||    
T  15953 tgtgacaacaaggcagctataagcatagctcataatccagttcaacatgatcgtacaaaacat 16015  T

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