View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_48 (Length: 291)
Name: NF18580_low_48
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 27509927 - 27510189
Alignment:
| Q |
15 |
aaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaatat |
114 |
Q |
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| T |
27509927 |
aaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacca-ctctataatgctttgaaaacaaaa-atatgaagccgcataattaatat |
27510024 |
T |
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| Q |
115 |
tactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggag |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27510025 |
tactaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggag |
27510124 |
T |
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| Q |
215 |
gcgcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatctctgctcct |
279 |
Q |
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| T |
27510125 |
gcgcacaaagatagacaaccctattgttagctgctcccgtgacacctaatttgatctttgctcct |
27510189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 27271477 - 27271209
Alignment:
| Q |
15 |
aaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaatat |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||| ||| |||||||| |
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| T |
27271477 |
aaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaacaaaaa-tataaagcgacatgattaatat |
27271382 |
T |
|
| Q |
115 |
tactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggag |
214 |
Q |
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| T |
27271381 |
tactaattcttccagaaatagtgcttaaattgataagatggaccatttcctccagtgcttgctgatggaggcatttttgttctcaacaccaacattggag |
27271282 |
T |
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| Q |
215 |
gcgcacaaagatagacaaccct--------attcttagctgctcctgtgacacctaatttgatctctgctcct |
279 |
Q |
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| T |
27271281 |
gcgcacaatgatagacaaccctatgtccccattgttagctgctcccgtgacacctaatttgatatttgctcct |
27271209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 39211009 - 39210744
Alignment:
| Q |
15 |
aaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaata- |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
39211009 |
aaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacca-ctctataatgctttgaaaacaaaaa-tatgaagtggcataattaatac |
39210912 |
T |
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| Q |
114 |
--ttactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattg |
211 |
Q |
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| T |
39210911 |
tattactaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattg |
39210812 |
T |
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| Q |
212 |
gaggcgcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatctctgctcct |
279 |
Q |
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| T |
39210811 |
gaggcgcacaaagatagacaaccctattgttagctgctcctgtgacacctaatttgatctttgctcct |
39210744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 29707379 - 29707587
Alignment:
| Q |
15 |
aaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaatat |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||| ||| |||||||| |
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| T |
29707379 |
aaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaacaaaaa-tataaagcgacatgattaatat |
29707474 |
T |
|
| Q |
115 |
tactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggag |
214 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29707475 |
tactaattcttcaagaaatactacttaaattgataagatggaccatttcctccagtgcttgcagatggaggcatttttgttctcagcaccaacattggag |
29707574 |
T |
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| Q |
215 |
gcgcacaaagata |
227 |
Q |
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|||||||| |||| |
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| T |
29707575 |
gcgcacaatgata |
29707587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 31949887 - 31949733
Alignment:
| Q |
117 |
ctaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
216 |
Q |
| |
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||||||||| ||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
31949887 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcaccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
31949788 |
T |
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| Q |
217 |
gcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatct |
271 |
Q |
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||||| ||||| |||||| |||| || ||||||| |||||||| | |||||||| |
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| T |
31949787 |
gcacatagatacacaaccttattgctatctgctcccgtgacaccaagtttgatct |
31949733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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