View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_5 (Length: 592)
Name: NF18580_low_5
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 45171488 - 45172048
Alignment:
| Q |
1 |
aaatagaaaatgtcacttatttgctatattgattctgatttatataaacttgcagctaccaacacaaaaaatatgccacttatagaaaatttcatttcaa |
100 |
Q |
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| T |
45171488 |
aaatagaaaatgtcacttatttgctatattgattctgatttatataaacttgcagctaccaacacaaaaaatatgccacttatggaaaatttcatttcaa |
45171587 |
T |
|
| Q |
101 |
tcatcataaccatagnnnnnnnnccataaataaaagcattcgtatacaaaaagacttacattatgcaataacatggtccttcctctttaaaacactcaaa |
200 |
Q |
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| T |
45171588 |
tcatcataaccatagttttttttccataaataaaagcattcgtatacaaaaagacttacattatgcaatgacatggtccttcctctttaaaacactcaaa |
45171687 |
T |
|
| Q |
201 |
cacaggaggcttccaatgatttacagcacatgtctcatacagctttgatctaccacatcctttcttcatacctaacaaacaataataacaaaatactcat |
300 |
Q |
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| T |
45171688 |
cacaggaggcttccaatgatttacagcacatgtctcatacagctttgatctaccacaccctttcttcatacctaacaaacaataataccaaaatactcat |
45171787 |
T |
|
| Q |
301 |
ttttctcatttcttgaaaaacaaatatttttacaagaaagatacnnnnnnnnnnnnntgaaattttttggaaaacatgtaataattaatggtattttacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45171788 |
ttttctcatttcttgaaaaacaaatatttttacaagaaagatacaaaaaaaaaaaaatgaaattttttggaaaacatgtaataattaatggtattttacc |
45171887 |
T |
|
| Q |
401 |
ttcatctgaagttgttgtcttccctaaagtgacactctctttggaagatgaaactgaagattggatgttttcaagaacagcatcaatgtttttcaagact |
500 |
Q |
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| T |
45171888 |
ttcatctgaagttgttgtcttccctaaaatgacactctctttg------------gaagattggattttttcaagaacatcatcaatgtttttcaagact |
45171975 |
T |
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| Q |
501 |
ggattttgaacaatgctttcaacagtttcaaccattttcatttgattattgatgttgggtttcaccatttttg |
573 |
Q |
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| T |
45171976 |
ggattttgaacaatgctttcaacagtttcaaccattttcatttgattattgatgttgggtttcaccatttttg |
45172048 |
T |
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