View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_50 (Length: 290)
Name: NF18580_low_50
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 5434870 - 5434600
Alignment:
| Q |
13 |
gaacctgtggaaacaacaggaggctagattcttcaaaagaataagaggtttataaaaagttttattgtatt---catggtttcttttgtttgattcttat |
109 |
Q |
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| T |
5434870 |
gaacctgtggaaacaacaggaggctagattcttcaaaagaataagaggtttggaaaaagttttattgtattattcatggtttcttttgtttgattcttat |
5434771 |
T |
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| Q |
110 |
tttggatatggctcttaagaacacatccttgctagattgtgatcttatgcttaagctgttgtaagctttaatgatat-----gttttctccctggaaaat |
204 |
Q |
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| T |
5434770 |
tttggatatggctcttaagaacacatccttgctagattatgatcttatgcttaagctgttgtaagctttaatgatatgtttagttttctccctggaaaat |
5434671 |
T |
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| Q |
205 |
ttagactatgagctgtcaatggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttct |
275 |
Q |
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| T |
5434670 |
ttagactatgagctgtcaatggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttct |
5434600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 536236 - 536170
Alignment:
| Q |
199 |
gaaaatttagactatgagctgtcaatggtgttgtggtttttctgcattaaaaagaattaagttttag |
265 |
Q |
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| T |
536236 |
gaaaatttattctatgatttggcaagggtgttgtggtttttctgcactaaaaacaatgaagttttag |
536170 |
T |
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