View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_52 (Length: 285)
Name: NF18580_low_52
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 22322907 - 22323106
Alignment:
| Q |
11 |
atcatcacatgaaatcttatttgactgcacaaacatgacataatacattagtgatatttttactatttaagacataggtataagtttgatatcatttaca |
110 |
Q |
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| T |
22322907 |
atcatcacatgaaatcttatttgactgcataaacatgacataatacattagtgatatttttactatttaagacataggtataagttggatatcatttaca |
22323006 |
T |
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| Q |
111 |
taccatcaacaatgcataatgaacatcaataagaaacatagtacgggaaggaaccatgtttcttatagaagataaaagcactgaaagaggcatcctaggg |
210 |
Q |
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| T |
22323007 |
taccatcaacaatgcataatgaacatcaataagaaacatagtacgggaaggaaccatgtttcttatagaagataaaagcactgaaaaaggcatcctaggg |
22323106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 3292033 - 3291884
Alignment:
| Q |
53 |
atacattagtgatatttttactatttaagacataggtataagtttgatatcatttacataccatcaacaatgcataatgaacatcaataagaaacatagt |
152 |
Q |
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| T |
3292033 |
atacattagtgatatttt-actatttaagacataggcataaattggacatcatttacataccatcaacaacgcgtattgggcgtcaataagaaacatagt |
3291935 |
T |
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| Q |
153 |
acgggaaggaaccatgtttcttatagaagataaaagcactgaaagaggcat |
203 |
Q |
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| T |
3291934 |
atgagaaggaacaatgtttctcatggaagataaaagcacggaaaaaggcat |
3291884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 3128053 - 3128312
Alignment:
| Q |
11 |
atcatcacatgaaatcttatttgactgcacaaacatgacataatacattagtgatatttttactatttaagacataggtataagtttgatatcatttaca |
110 |
Q |
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| T |
3128053 |
atcaccacgtgaaatcttatttgactgcacaagcacgacatgatacattaatgata-ttttactatttaagacatatgcataaattagacaacattttca |
3128151 |
T |
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| Q |
111 |
taccatcaacaatgcataatgaacatcaataagaaacatagtacgggaaggaaccatgtttcttatagaagataaaagcactgaaagaggcatcctaggg |
210 |
Q |
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| T |
3128152 |
taccatcaataacgcatattgggcgtcgagaagaaacataatattggaaggaaccatgtttctcaaggaagataaaagcacggaaaaaggcaccgatgcg |
3128251 |
T |
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| Q |
211 |
gaacttggagtacttgttatgttagtaggcacactagtagctttgacatgaggcttcccac |
271 |
Q |
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| T |
3128252 |
gaacctggagttcttctgatgttagcaggaacaccggtagcttttacctgagtcatcccac |
3128312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 2988239 - 2988206
Alignment:
| Q |
98 |
gatatcatttacataccatcaacaatgcataatg |
131 |
Q |
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| T |
2988239 |
gatatcatttacataccataaacaatgcataatg |
2988206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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