View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_53 (Length: 284)

Name: NF18580_low_53
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_53
NF18580_low_53
[»] chr1 (6 HSPs)
chr1 (4-274)||(35900035-35900305)
chr1 (3-189)||(17810658-17810844)
chr1 (24-203)||(44145948-44146127)
chr1 (3-162)||(11543460-11543619)
chr1 (3-217)||(44613660-44613874)
chr1 (3-188)||(44794493-44794678)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-203)||(28121-28323)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-203)||(170469-170671)
scaffold0017 (3-201)||(181558-181756)
[»] chr5 (1 HSPs)
chr5 (1-202)||(29506511-29506712)
[»] chr3 (2 HSPs)
chr3 (3-179)||(8343614-8343790)
chr3 (1-176)||(26729205-26729380)
[»] chr2 (2 HSPs)
chr2 (8-195)||(29227859-29228046)
chr2 (8-195)||(29341158-29341345)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 35900035 - 35900305
Alignment:
Q  4 tttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaatc 103  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35900035 tttcatggtccattacctttatggattggagatagtttgcaccaattaataatcttaagccttcggttcaataaattcaatggaagtctaccttcaaatc 35900134  T
Q  104 tctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctcagga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35900135 tctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctcagga 35900234  T
Q  204 gttcattaattcaacttcatcatttctacctgtggtttcactcaacaactggtcttttaatttaccctatg 274  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35900235 gttcattaattcaacttcatcatttctacctgtgatttcactcaacaactggtcttttaatttaccctatg 35900305  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 17810844 - 17810658
Alignment:
Q  3 gtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaat 102  Q
    |||||||||| ||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| || | ||||||| |||||||||||    
T  17810844 gtttcatggtccattaccttcatgggttggagacaatttacaccaattagtaatcttaagtcttcgattcaataatttaagtggaagtataccttcaaat 17810745  T
Q  103 ctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttact 189  Q
     | |||||||||||||| ||||  || || ||| ||||||| |||| ||||||||||||||||||||||||||||| |||| |||||    
T  17810744 gtatgttatttgagaaaacttcgagtattggatctgtcactaaataacttatcaggaggaatcccaacttgtgtaatgaattttact 17810658  T

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Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 44145948 - 44146127
Alignment:
Q  24 atggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaatctctgttatttgagaaat-ct 122  Q
    |||||||||||| ||||||||||||||| |||||||||| || |  |||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||    
T  44145948 atggattggagatagtttacaccaattagtaatcttaagcctccaattcaataacttcaatggaagtctaccttcaaatctctg-tatttgaaaaatcct 44146046  T
Q  123 tcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctcagga 203  Q
     || ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||    
T  44146047 ccaagtcttggatctgtcactaaatagcttatcaggaggaatcccaacttgtgtaaataattttacttcaatggatcagga 44146127  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 11543619 - 11543460
Alignment:
Q  3 gtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaat 102  Q
    |||||||||| | ||||||| ||||||||||| ||||||||| ||| || |||||||||| ||| |   |||||| |||| ||||||| |||||||||||    
T  11543619 gtttcatggtccgttaccttcatggattggaggcagtttacaacaactagtaatcttaagcctttgagccaataacttcagtggaagtataccttcaaat 11543520  T
Q  103 ctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggagga 162  Q
    ||||||||||| ||||| || ||| |||||||| ||||||| ||||||||||||||||||    
T  11543519 ctctgttatttaagaaaactgcatatcttagatatgtcactaaatagcttatcaggagga 11543460  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 44613660 - 44613874
Alignment:
Q  3 gtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaat 102  Q
    |||||||||| ||||||||| |||||||||||| || |||||  | |||  ||||||||| ||||| | |||||| ||| |||||||| |||||||||||    
T  44613660 gtttcatggtccattaccttcatggattggagatagcttacaaaatttagaaatcttaagccttcgatccaataacttctatggaagtttaccttcaaat 44613759  T
Q  103 ctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctcagg 202  Q
    |||||||| |||| ||| ||||| ||||| ||||||||||| || | | |||||||| |||||||||||||| |||| ||| |||| | |||| || |||    
T  44613760 ctctgttacttgacaaaacttcaagtcttggatttgtcactgaacaacatatcaggaagaatcccaacttgtataaacaattttacatcaatgtcttagg 44613859  T
Q  203 agttcattaattcaa 217  Q
    | || |||| |||||    
T  44613860 acttgattagttcaa 44613874  T

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Target: chr1; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 44794678 - 44794493
Alignment:
Q  3 gtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaat 102  Q
    |||||||||| ||||||||| |||||||||||| || |||||  | |||  ||||||||| ||||| | |||||| ||| |||||||| |||||||||||    
T  44794678 gtttcatggtccattaccttcatggattggagatagcttacaaaatttagaaatcttaagccttcgatccaataacttctatggaagtttaccttcaaat 44794579  T
Q  103 ctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttac 188  Q
    |||||||| |||| ||| ||||| ||||| ||||||||||| || | | |||||||| |||||||||||||| |||| ||| ||||    
T  44794578 ctctgttacttgacaaaacttcaagtcttggatttgtcactgaacaacatatcaggaagaatcccaacttgtataaacaattttac 44794493  T

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Target: scaffold0061 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 28323 - 28121
Alignment:
Q  1 atgtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaa 100  Q
    |||||||| ||| ||||||||| ||||||||||||||  ||||  |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  28323 atgtttcaaggtccattaccttcatggattggagacaacttacgacaattagtaatcttaagccttcgattcaataacttcaatggaagtctaccttcaa 28224  T
Q  101 atctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctca 200  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||||| ||| | |||| |||||||||    
T  28223 atctatgttatttgacaaaacttcatgtcttagatatgtcactaaataatttatcaggaggaatccccacttgtgtaaacaatttaacttcaatggctca 28124  T
Q  201 gga 203  Q
    |||    
T  28123 gga 28121  T

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Target: scaffold0017 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 170469 - 170671
Alignment:
Q  1 atgtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaa 100  Q
    |||||||| ||| ||||||||| ||||||||||||||  ||||  |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  170469 atgtttcaaggtccattaccttcatggattggagacaacttacgacaattagtaatcttaagccttcgattcaataacttcaatggaagtctaccttcaa 170568  T
Q  101 atctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctca 200  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||||| ||| | |||| |||||||||    
T  170569 atctatgttatttgacaaaacttcatgtcttagatatgtcactaaataatttatcaggaggaatccccacttgtgtaaacaatttaacttcaatggctca 170668  T
Q  201 gga 203  Q
    |||    
T  170669 gga 170671  T

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Target: scaffold0017; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 181558 - 181756
Alignment:
Q  3 gtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaat 102  Q
    |||||||||| ||||||||  |||||||||| | ||||||||||||||| |||||||||| ||||| ||||| || |||||||||| ||| |||||||||    
T  181558 gtttcatggtccattacctgcatggattggacaaagtttacaccaattagtaatcttaagccttcgattcaacaacttcaatggaattcttccttcaaat 181657  T
Q  103 ctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctcag 201  Q
    ||||||||||||| ||| ||||||||||| ||| ||||  | ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  181658 ctctgttatttgacaaaacttcatgtcttggatctgtccgtaaatagcttatcaggaggaatcccaacttgtgtaaagaattttacttcaatgactcag 181756  T

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Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29506712 - 29506511
Alignment:
Q  1 atgtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaa 100  Q
    |||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||| |||||  ||||| | ||||| | ||| || |||||||    
T  29506712 atgtttcatggtccaataccttcatggattggagacagtttacaccagttaataatcttaagccttcgactcaatgatttcaacgaaagcctgccttcaa 29506613  T
Q  101 atctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatggctca 200  Q
    | || |||||||||||| | ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  29506612 acctatgttatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatcccaacatgtgtaaagaattttacttcaatggctca 29506513  T
Q  201 gg 202  Q
    ||    
T  29506512 gg 29506511  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 8343614 - 8343790
Alignment:
Q  3 gtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaat 102  Q
    |||||||||| ||||||||| ||||||||||||||  ||||| |||||| ||||||||||  ||||  ||||||| |||||||||||| |||||||||||    
T  8343614 gtttcatggtccattaccttcatggattggagacaacttacatcaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcaaat 8343713  T
Q  103 ctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaa 179  Q
    || |||||||||||||| ||||||||||| ||| |||| || |||| |||||||||||| || ||| | ||||||||    
T  8343714 ctttgttatttgagaaaacttcatgtcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaa 8343790  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 26729205 - 26729380
Alignment:
Q  1 atgtttcatggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaa 100  Q
    |||||||||||| ||||||||  |||||||||||| |||||||  ||||||||||| ||||| |||||||||||||| ||| |||||||| |||||||||    
T  26729205 atgtttcatggtccattacctgcatggattggagagagtttacggcaattaataatattaagccttcggttcaataacttctatggaagtataccttcaa 26729304  T
Q  101 atctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgt 176  Q
    || | |||||||||||||| |||   ||||| ||| | || || |||| ||||||||||||||||||||| |||||    
T  26729305 atatttgttatttgagaaaccttagagtcttggatctttccctaaataacttatcaggaggaatcccaacatgtgt 26729380  T

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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 29228046 - 29227859
Alignment:
Q  8 atggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaatctctg 107  Q
    ||||| |||| ||||||||||||||||||||| ||||   || | |||||||||| ||||| |  || |  ||||||||||||||| |||||||||||||    
T  29228046 atggtgcattgcctttatggattggagacagtctacaaggatcactaatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctg 29227947  T
Q  108 ttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatg 195  Q
    |||||||||| | ||||| || |||||| ||||||| |||||||| ||||||||||| ||| | ||||| |||||| |||||| ||||    
T  29227946 ttatttgagagaacttcaagtattagatctgtcactaaatagcttctcaggaggaattccatcatgtgttaagaattttacttcaatg 29227859  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 29341345 - 29341158
Alignment:
Q  8 atggtacattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaatctctg 107  Q
    ||||| |||| ||||||||||||||||||||| ||||   || | |||||||||| ||||| |  || |  ||||||||||||||| |||||||||||||    
T  29341345 atggtgcattgcctttatggattggagacagtctacaaggatcactaatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctg 29341246  T
Q  108 ttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatg 195  Q
    |||||||||| | ||||| || |||||| ||||||| |||||||| ||||||||||| ||| | ||||| |||||| |||||| ||||    
T  29341245 ttatttgagagaacttcaagtattagatctgtcactaaatagcttctcaggaggaattccatcatgtgttaagaattttacttcaatg 29341158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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