View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_56 (Length: 270)

Name: NF18580_low_56
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_56
NF18580_low_56
[»] chr2 (4 HSPs)
chr2 (18-123)||(43469058-43469163)
chr2 (89-148)||(38879516-38879575)
chr2 (170-235)||(43469180-43469251)
chr2 (89-148)||(11028778-11028837)
[»] chr8 (3 HSPs)
chr8 (89-147)||(36132675-36132733)
chr8 (90-148)||(42056680-42056738)
chr8 (78-148)||(40719945-40720017)
[»] chr1 (4 HSPs)
chr1 (89-148)||(39744218-39744277)
chr1 (89-148)||(21356793-21356852)
chr1 (89-148)||(24241477-24241536)
chr1 (86-151)||(29189737-29189802)
[»] chr7 (1 HSPs)
chr7 (89-147)||(30783533-30783589)
[»] chr5 (2 HSPs)
chr5 (89-147)||(20524654-20524712)
chr5 (89-147)||(8026466-8026526)
[»] chr4 (1 HSPs)
chr4 (85-147)||(39503556-39503620)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 43469058 - 43469163
Alignment:
Q  18 aatcatacgtcaaatttgaatttggaaataatggccgtgtttcgtattgcggcagcttagatggaaatgaagtattcttctatagtcacaaaactaaatt 117  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43469058 aatcatacgtcaaatttgaatttggaaataatggctatgtttcgtattgcggcagcttagatggaaatgaagtattcttctacagtcacaaaactaaatt 43469157  T
Q  118 aataat 123  Q
    ||||||    
T  43469158 aataat 43469163  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 38879516 - 38879575
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagatt 148  Q
    ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  38879516 gtattcttccatagtcacaagaccaaattaataatgtttggacacacacataaaaagatt 38879575  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 43469180 - 43469251
Alignment:
Q  170 cttataactttcatcctcgaaatgaacactaat------agctgtattggtttgagtaaacaaatagaagtg 235  Q
    |||||||||||||||||||||||||||||||||      | ||||||||| |||||||||||||||||||||    
T  43469180 cttataactttcatcctcgaaatgaacactaatttgtgcaactgtattggattgagtaaacaaatagaagtg 43469251  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 11028778 - 11028837
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagatt 148  Q
    ||||||||| || |||| || || |||| |||||||||||| ||||||||||||||||||    
T  11028778 gtattcttccatcgtcaaaagaccaaatcaataatgtttggacacacacataaaaagatt 11028837  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 36132675 - 36132733
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagat 147  Q
    |||||||||||||||||||| |||||||||||| | |||||  ||||||||||||||||    
T  36132675 gtattcttctatagtcacaagactaaattaatagtatttggatacacacataaaaagat 36132733  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 42056680 - 42056738
Alignment:
Q  90 tattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagatt 148  Q
    |||||||| || ||||||| || |||| |||||||||||| |||| |||||||||||||    
T  42056680 tattcttccatggtcacaagaccaaatcaataatgtttggacacaaacataaaaagatt 42056738  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 40720017 - 40719945
Alignment:
Q  78 atggaaatgaagtattcttctatagtcacaaaactaaattaataatgtttgg--gcacacacataaaaagatt 148  Q
    ||||| |||| ||||||||| || |||| || | ||||||||||||||||||   ||||||||||||||||||    
T  40720017 atggacatgaggtattcttccatggtcaaaagattaaattaataatgtttggacacacacacataaaaagatt 40719945  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 39744277 - 39744218
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagatt 148  Q
    |||||||||||| ||||||| || |||| |||||||||||| |||||| |||||||||||    
T  39744277 gtattcttctatggtcacaagaccaaatcaataatgtttggacacacatataaaaagatt 39744218  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 21356793 - 21356852
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagatt 148  Q
    |||||||| ||| ||||||| || |||| |||||||||||| |||||| |||||||||||    
T  21356793 gtattcttttatggtcacaagaccaaatcaataatgtttggacacacatataaaaagatt 21356852  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 24241477 - 24241536
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagatt 148  Q
    ||||||||| || ||||||  || |||| |||||||||||| ||||||||||||||||||    
T  24241477 gtattcttccatggtcacatgaccaaatcaataatgtttggacacacacataaaaagatt 24241536  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 29189802 - 29189737
Alignment:
Q  86 gaagtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagattgtc 151  Q
    |||||||||||||||  |||||| ||||||| |||| ||||||| ||||| |||||| | ||||||    
T  29189802 gaagtattcttctatgatcacaagactaaataaatagtgtttggacacacgcataaagaaattgtc 29189737  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 30783589 - 30783533
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagat 147  Q
    |||||||||||| |||| || |||||||||||| |||||||  ||||||||||||||||    
T  30783589 gtattcttctatggtcagaagactaaattaatagtgtttgg--acacacataaaaagat 30783533  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 20524712 - 20524654
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgggcacacacataaaaagat 147  Q
    ||||||||| ||  |||||||||||||| |||| ||||||| ||||||||| |||||||    
T  20524712 gtattcttccatgatcacaaaactaaatcaatactgtttggacacacacatcaaaagat 20524654  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 8026466 - 8026526
Alignment:
Q  89 gtattcttctatagtcacaaaactaaattaataatgtttgg--gcacacacataaaaagat 147  Q
    |||||||||||||||||||| || |||| |||| |||||||  ||| ||||||||||||||    
T  8026466 gtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataaaaagat 8026526  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 39503620 - 39503556
Alignment:
Q  85 tgaagtattcttctatagtcacaaaactaaattaataatgtttgggcac--acacataaaaagat 147  Q
    |||||||||||||||| ||||||| ||||||| |||| ||||||  |||  ||||||||||||||    
T  39503620 tgaagtattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagat 39503556  T

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