View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_low_67 (Length: 252)

Name: NF18580_low_67
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_low_67
NF18580_low_67
[»] chr7 (12 HSPs)
chr7 (26-151)||(41030522-41030647)
chr7 (200-252)||(41030781-41030833)
chr7 (149-194)||(41030701-41030746)
chr7 (21-69)||(42187489-42187537)
chr7 (21-72)||(38135424-38135475)
chr7 (22-72)||(24549905-24549955)
chr7 (30-71)||(35713723-35713764)
chr7 (21-74)||(36101975-36102028)
chr7 (32-72)||(29650414-29650454)
chr7 (32-72)||(38607034-38607074)
chr7 (32-72)||(43281704-43281744)
chr7 (32-72)||(45836692-45836732)
[»] chr2 (11 HSPs)
chr2 (22-73)||(9578914-9578965)
chr2 (208-252)||(42607216-42607261)
chr2 (30-74)||(3481169-3481213)
chr2 (32-72)||(12734729-12734769)
chr2 (32-72)||(38429914-38429954)
chr2 (32-74)||(43752157-43752199)
chr2 (21-66)||(6218986-6219031)
chr2 (32-73)||(25834711-25834752)
chr2 (32-73)||(41763253-41763294)
chr2 (42-70)||(9578713-9578741)
chr2 (32-72)||(43238305-43238345)
[»] chr4 (5 HSPs)
chr4 (21-74)||(47611746-47611799)
chr4 (21-68)||(55768717-55768764)
chr4 (21-68)||(55832973-55833020)
chr4 (32-70)||(31459060-31459098)
chr4 (32-73)||(42285911-42285952)
[»] chr1 (8 HSPs)
chr1 (21-74)||(2544618-2544671)
chr1 (20-73)||(32404737-32404790)
chr1 (21-71)||(48431619-48431669)
chr1 (21-74)||(35828760-35828813)
chr1 (32-72)||(15085964-15086004)
chr1 (41-73)||(16822233-16822265)
chr1 (32-72)||(38807883-38807923)
chr1 (32-68)||(44905548-44905584)
[»] chr3 (12 HSPs)
chr3 (21-74)||(42510226-42510277)
chr3 (32-72)||(25191407-25191447)
chr3 (21-71)||(21200567-21200617)
chr3 (30-60)||(29919332-29919362)
chr3 (30-60)||(29968485-29968515)
chr3 (30-72)||(36820173-36820215)
chr3 (32-74)||(50960843-50960885)
chr3 (32-73)||(38060461-38060502)
chr3 (32-73)||(39235168-39235209)
chr3 (21-58)||(44134056-44134093)
chr3 (32-72)||(47233808-47233848)
chr3 (32-72)||(49503766-49503806)
[»] chr6 (4 HSPs)
chr6 (32-73)||(24665840-24665881)
chr6 (40-74)||(14389378-14389412)
chr6 (32-73)||(608187-608228)
chr6 (32-72)||(5258360-5258400)
[»] scaffold0018 (1 HSPs)
scaffold0018 (31-73)||(44079-44121)
[»] chr8 (6 HSPs)
chr8 (33-71)||(9905094-9905132)
chr8 (21-74)||(29645056-29645109)
chr8 (41-74)||(43904875-43904908)
chr8 (30-74)||(36143393-36143437)
chr8 (32-72)||(42854216-42854256)
chr8 (33-73)||(45419268-45419308)
[»] chr5 (14 HSPs)
chr5 (21-71)||(6889012-6889062)
chr5 (21-71)||(42199305-42199355)
chr5 (21-74)||(79532-79585)
chr5 (20-73)||(4026546-4026599)
chr5 (32-73)||(14749337-14749378)
chr5 (32-73)||(33667246-33667287)
chr5 (32-72)||(1525674-1525714)
chr5 (37-73)||(2712979-2713015)
chr5 (32-72)||(3301874-3301914)
chr5 (32-72)||(14665744-14665784)
chr5 (32-72)||(16347590-16347630)
chr5 (21-73)||(28676614-28676666)
chr5 (32-72)||(31636132-31636172)
chr5 (32-72)||(38684997-38685037)
[»] scaffold0045 (1 HSPs)
scaffold0045 (32-72)||(86821-86861)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 41030522 - 41030647
Alignment:
Q  26 ataatggaaaatagacttaggtggtttggacatgtaaagagaagacctaatttacaatatcaatagctagtttcagttccttcttaattacaaatttaca 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41030522 ataatggaaaatagacttaggtggtttggacatgtaaagagaagacctaatttacaatatcaatagcttgtttcagttccttcttaattacaaatttaca 41030621  T
Q  126 attgtgtaacacctattttgtggtta 151  Q
    ||||||||||||||||||||||||||    
T  41030622 attgtgtaacacctattttgtggtta 41030647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 41030781 - 41030833
Alignment:
Q  200 cttttaggtttgtttatgaagaaatcagaaaatttattatgtgtctcaggatc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41030781 cttttaggtttgtttatgaagaaatcagaaaatttattatgtgtctcaggatc 41030833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 41030701 - 41030746
Alignment:
Q  149 ttaaagattgcattttatattatagctgtcacatttctgttccatt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41030701 ttaaagattgcattttatattatagctgtcacatttctgttccatt 41030746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 42187489 - 42187537
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaag 69  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||    
T  42187489 aaaagatggtggaaaataggcttaggtggtttgggcatgtaaagagaag 42187537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 38135475 - 38135424
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||  |||||||||| ||||||||||||||||||||| | ||||||||    
T  38135475 aaaagatggtggaaaataggcttaggtggtttggacatgtagacagaagacc 38135424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 24549955 - 24549905
Alignment:
Q  22 aaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||| ||||||| ||| |||||||||||||| |||||| ||||||||||    
T  24549955 aaagatgatggaaactaggcttaggtggtttgggcatgtagagagaagacc 24549905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 35713723 - 35713764
Alignment:
Q  30 tggaaaatagacttaggtggtttggacatgtaaagagaagac 71  Q
    |||||||||| |||||||||||||| |||||| |||||||||    
T  35713723 tggaaaataggcttaggtggtttgggcatgtagagagaagac 35713764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 36102028 - 36101975
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||  |||||||||| ||||||||||||||  ||||| ||||||||||||    
T  36102028 aaaagatgttggaaaataggcttaggtggtttggggatgtagagagaagaccta 36101975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 29650414 - 29650454
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  29650414 gaaaataggcttagatggtttggacatgtagagagaagacc 29650454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 38607034 - 38607074
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  38607034 gaaaataggcttagatggtttggacatgtagagagaagacc 38607074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 43281704 - 43281744
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  43281704 gaaaataggcttagatggtttggacatgtagagagaagacc 43281744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 45836732 - 45836692
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  45836732 gaaaataggcttagatggtttggacatgtagagagaagacc 45836692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 9578965 - 9578914
Alignment:
Q  22 aaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  9578965 aaagatgatgtaaaatagacttaggtggtttggacatgtagagagaagacct 9578914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 42607216 - 42607261
Alignment:
Q  208 tttgtttatgaagaaa-tcagaaaatttattatgtgtctcaggatc 252  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  42607216 tttgtttatgaagaaaatcagaagatttattatgtgtctcaggatc 42607261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 3481169 - 3481213
Alignment:
Q  30 tggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||    
T  3481169 tggaaaacaggcttaggtggtttggacatgtagagagaagaccta 3481213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 12734729 - 12734769
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  12734729 gaaaataggcttagatggtttggacatgtaaagagaagacc 12734769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 38429914 - 38429954
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  38429914 gaaaataggcttagatggtttggacatgtaaagagaagacc 38429954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 43752199 - 43752157
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||| |||||||| |||||||||||| ||||||||||||    
T  43752199 gaaaataggcttaggtgatttggacatgtagagagaagaccta 43752157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 6218986 - 6219031
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagag 66  Q
    |||||||| |||| ||||| ||||||||||||||||||||| ||||    
T  6218986 aaaagatagtggataataggcttaggtggtttggacatgtagagag 6219031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 25834711 - 25834752
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  25834711 gaaaataggcttagatggtttggacatgtagagagaagacct 25834752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 41763294 - 41763253
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||| ||||||||||||||||||| | |||||||||||    
T  41763294 gaaaataggcttaggtggtttggacatgcagagagaagacct 41763253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 9578741 - 9578713
Alignment:
Q  42 ttaggtggtttggacatgtaaagagaaga 70  Q
    |||||||||||||||||||||||||||||    
T  9578741 ttaggtggtttggacatgtaaagagaaga 9578713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 43238345 - 43238305
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| |||||||| |||||||||||||||||    
T  43238345 gaaaataggcttagatggtttgggcatgtaaagagaagacc 43238305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 47611746 - 47611799
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    ||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||    
T  47611746 aaaagatgatggaaaataggcttaggtggtttgggcatgtagagagaagaccta 47611799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 55768764 - 55768717
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaa 68  Q
    ||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  55768764 aaaagatcatggaaaataggtttaggtggtttagacatgtaaagagaa 55768717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 55833020 - 55832973
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaa 68  Q
    ||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  55833020 aaaagatcatggaaaataggtttaggtggtttagacatgtaaagagaa 55832973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 31459060 - 31459098
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaaga 70  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  31459060 gaaaataggcttaggtggtttgggcatgtaaagagaaga 31459098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 42285952 - 42285911
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||| |||||||||||||||||| |||||| |||||||||||    
T  42285952 gaaactagacttaggtggtttgggcatgtatagagaagacct 42285911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 2544618 - 2544671
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||  ||||||| |||||||||||||||||||||||| ||||||||||||    
T  2544618 aaaagatggtggaaaacagacttaggtggtttggacatgtagagagaagaccta 2544671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 32404790 - 32404737
Alignment:
Q  20 aaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    ||||||||  |||||||||| ||||||||||||||| ||||| |||||||||||    
T  32404790 aaaaagatggtggaaaataggcttaggtggtttggatatgtagagagaagacct 32404737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 48431669 - 48431619
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 71  Q
    |||||||  |||||||||| |||||||||||||| |||||| |||||||||    
T  48431669 aaaagatggtggaaaataggcttaggtggtttgggcatgtagagagaagac 48431619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 35828813 - 35828760
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||  ||||||||||  ||||||||||||||| |||| ||||||||||||    
T  35828813 aaaagatggtggaaaatagggttaggtggtttggacgtgtagagagaagaccta 35828760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 15085964 - 15086004
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  15085964 gaaaataggcttagatggtttggacatgtagagagaagacc 15086004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 16822265 - 16822233
Alignment:
Q  41 cttaggtggtttggacatgtaaagagaagacct 73  Q
    ||||||||||||||||||||| |||||||||||    
T  16822265 cttaggtggtttggacatgtagagagaagacct 16822233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 38807923 - 38807883
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||||||||| |||||| | |||||||||||||||||    
T  38807923 gaaaatagacttagatggtttaggcatgtaaagagaagacc 38807883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 44905584 - 44905548
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaa 68  Q
    |||||||  ||||||||||||||||||||||||||||    
T  44905584 gaaaatatgcttaggtggtttggacatgtaaagagaa 44905548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 42510277 - 42510226
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||| |||||||||| ||||||||||||||||||||  ||||||||||||    
T  42510277 aaaagatagtggaaaataggcttaggtggtttggacatgt--agagaagaccta 42510226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 25191407 - 25191447
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  25191407 gaaaatagacttagatggtttggacatgtagagagaagacc 25191447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 21200567 - 21200617
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 71  Q
    |||||||  |||||| |||||||||||||||||| |||||| |||||||||    
T  21200567 aaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagac 21200617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 29919332 - 29919362
Alignment:
Q  30 tggaaaatagacttaggtggtttggacatgt 60  Q
    |||||||||||||||||||||||||||||||    
T  29919332 tggaaaatagacttaggtggtttggacatgt 29919362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 29968485 - 29968515
Alignment:
Q  30 tggaaaatagacttaggtggtttggacatgt 60  Q
    |||||||||||||||||||||||||||||||    
T  29968485 tggaaaatagacttaggtggtttggacatgt 29968515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 36820215 - 36820173
Alignment:
Q  30 tggaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||| ||| |||||||||||| |||||||||||||||||||    
T  36820215 tggaaactaggcttaggtggtttagacatgtaaagagaagacc 36820173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 50960885 - 50960843
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||| |||||||||||||| |||||| ||||||||||||    
T  50960885 gaaaataggcttaggtggtttgggcatgtagagagaagaccta 50960843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 38060461 - 38060502
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  38060461 gaaaataggcttagatggtttggacatgtagagagaagacct 38060502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 39235168 - 39235209
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||| |||||||||||||| |||||| |||||||||||    
T  39235168 gaaaataggcttaggtggtttgggcatgtagagagaagacct 39235209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 44134093 - 44134056
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacat 58  Q
    |||||||  |||||||||||||||||||||||||||||    
T  44134093 aaaagatggtggaaaatagacttaggtggtttggacat 44134056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 47233848 - 47233808
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  47233848 gaaaataggcttagatggtttggacatgtagagagaagacc 47233808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 49503806 - 49503766
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| |||||||||||||| |||||| ||||||||||    
T  49503806 gaaaataggcttaggtggtttgggcatgtagagagaagacc 49503766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 24665840 - 24665881
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  24665840 gaaaataggcttaggtggtttggacatgtagagagaagacct 24665881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 14389412 - 14389378
Alignment:
Q  40 acttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||||||||||||||||| ||||||||||||    
T  14389412 acttaggtggtttggacatgtagagagaagaccta 14389378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 608187 - 608228
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  608187 gaaaataggcttagatggtttggacatgtagagagaagacct 608228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 5258400 - 5258360
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  5258400 gaaaataggcttagatggtttggacatgtagagagaagacc 5258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 44121 - 44079
Alignment:
Q  31 ggaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    ||||||||| |||||||||||||| |||||| |||||||||||    
T  44121 ggaaaataggcttaggtggtttgggcatgtagagagaagacct 44079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 9905132 - 9905094
Alignment:
Q  33 aaaatagacttaggtggtttggacatgtaaagagaagac 71  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  9905132 aaaataggcttaggtggtttggacatgtagagagaagac 9905094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 29645056 - 29645109
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||  ||||||||||  |||  ||||||||||||||||||||||||||||    
T  29645056 aaaagatggtggaaaataggtttaattggtttggacatgtaaagagaagaccta 29645109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 43904908 - 43904875
Alignment:
Q  41 cttaggtggtttggacatgtaaagagaagaccta 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  43904908 cttaggtggtttggacatgtagagagaagaccta 43904875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 36143393 - 36143437
Alignment:
Q  30 tggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    ||||||||||||||||||||||||| ||| || ||| ||||||||    
T  36143393 tggaaaatagacttaggtggtttgggcatttagagaaaagaccta 36143437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 42854256 - 42854216
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  42854256 gaaaataggcttagatggtttggacatgtagagagaagacc 42854216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 45419268 - 45419308
Alignment:
Q  33 aaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||||||||||||||||| |||||| ||| |||||||    
T  45419268 aaaatagacttaggtggtttgggcatgtagagataagacct 45419308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 6889012 - 6889062
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 71  Q
    |||||||  |||||||||| |||| |||||||||||||||| |||||||||    
T  6889012 aaaagatggtggaaaataggcttaagtggtttggacatgtagagagaagac 6889062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 42199305 - 42199355
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagac 71  Q
    |||||||  |||||| |||||||||||||||||| |||||| |||||||||    
T  42199305 aaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagac 42199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 79532 - 79585
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagaccta 74  Q
    |||||||  ||||||| | | |||||||||||||||||||| ||||||||||||    
T  79532 aaaagatggtggaaaacataattaggtggtttggacatgtagagagaagaccta 79585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 4026599 - 4026546
Alignment:
Q  20 aaaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    ||||||||  |||||| ||| ||||||||||||||||||||| |||| ||||||    
T  4026599 aaaaagatggtggaaactagtcttaggtggtttggacatgtagagaggagacct 4026546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 14749337 - 14749378
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||| ||||||||| ||||||||||||||| |||||||||||    
T  14749337 gaaactagacttagatggtttggacatgtagagagaagacct 14749378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 33667246 - 33667287
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||| |||||||||||||||||| |||||| |||||||||||    
T  33667246 gaaactagacttaggtggtttgggcatgtagagagaagacct 33667287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 1525674 - 1525714
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||| ||||||||||||| ||||||||||| ||||||||||    
T  1525674 gaaactagacttaggtggcttggacatgtagagagaagacc 1525714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 2712979 - 2713015
Alignment:
Q  37 tagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||||||||||||| |||||| |||||||||||    
T  2712979 tagacttaggtggtttgggcatgtagagagaagacct 2713015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 3301874 - 3301914
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  3301874 gaaaataggcttagatggtttggacatgtagagagaagacc 3301914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 14665744 - 14665784
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  14665744 gaaaataggcttagatggtttggacatgtagagagaagacc 14665784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 16347630 - 16347590
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  16347630 gaaaataggcttagatggtttggacatgtagagagaagacc 16347590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 28676614 - 28676666
Alignment:
Q  21 aaaagataatggaaaatagacttaggtggtttggacatgtaaagagaagacct 73  Q
    |||||||  |||||||||| |||||||||||| | |||||| |||||||||||    
T  28676614 aaaagatggtggaaaatagtcttaggtggtttcggcatgtagagagaagacct 28676666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 31636172 - 31636132
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||| |||||||||||||||||| |||||| ||||||||||    
T  31636172 gaaactagacttaggtggtttgggcatgtagagagaagacc 31636132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 38684997 - 38685037
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  38684997 gaaaataggcttagatggtttggacatgtagagagaagacc 38685037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 86861 - 86821
Alignment:
Q  32 gaaaatagacttaggtggtttggacatgtaaagagaagacc 72  Q
    |||||||| ||||| | ||||||||||||||||||||||||    
T  86861 gaaaatagtcttagatagtttggacatgtaaagagaagacc 86821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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