View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_7 (Length: 521)
Name: NF18580_low_7
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35747965 - 35747749
Alignment:
| Q |
1 |
ccgaccagtttcttgcaccgttttcctttaccagtttcaccaacgtttcatcttcagttttactccatgaacccttcactttatcaccgttttcatcacc |
100 |
Q |
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| T |
35747965 |
ccgaccagtttcttgcaccgttttcctttaccagtttcaccaacgtttcatcttcagttttactccatgaacccttcactttatcaccgttttcgtcacc |
35747866 |
T |
|
| Q |
101 |
accatttgaattggaattttcactgatcctcttttcttctacctgtttgtgaaaatgcagaagtgaaagaaagaaaatatttaagtttatgaaatgataa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |
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| T |
35747865 |
accatttgaattggaattttcactgatcatcttttcttctacctgtttgtgaaaataccgaatagaaagaaagaaaatatttaagtttatgaaatgataa |
35747766 |
T |
|
| Q |
201 |
tgatgatgattatggtt |
217 |
Q |
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||||||||||||||||| |
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| T |
35747765 |
tgatgatgattatggtt |
35747749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 279 - 507
Target Start/End: Complemental strand, 35747687 - 35747459
Alignment:
| Q |
279 |
tggaattaagtaattataaaccttaaaagtaaaaactgtttttgttgtgtgtgtatgtaactacttccaacgtgtttgtttctgttcttcaacttcttct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35747687 |
tggaattaagtaattataaaccttaaaagtaaaaactgtttttgttgtgtgtgtatgtaactacttccaacgtgtttgtttctgttcttcaacttcttct |
35747588 |
T |
|
| Q |
379 |
tctacacannnnnnnnctgaatcttgaatcttcggttactaannnnnnnnnnnnctgtttataactatgggnnnnnnntgatagaagttgggtgtttttt |
478 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
35747587 |
tctacacattttttttctgaatcttgaatcttcggttactaatttttgttttttctgtttataactatgggaaaaaaatgatagaagttgggtgtttttt |
35747488 |
T |
|
| Q |
479 |
cgtttggagtagttaggtagaaggttatg |
507 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
35747487 |
cgtttggagtagttaggtagaaggttatg |
35747459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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