View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_74 (Length: 247)
Name: NF18580_low_74
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 21264139 - 21263900
Alignment:
| Q |
1 |
tttcctacttgtgatatctcccgcccagtcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264139 |
tttcctacttgtgatatctcccgcccagtcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggat |
21264040 |
T |
|
| Q |
101 |
ttcaagtaccggagaatccgaattactgcattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264039 |
ttcaagtaccggagaatccgaattactgcattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtc |
21263940 |
T |
|
| Q |
201 |
gtgtatgagatagatagataagttttccaactaacctttg |
240 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
21263939 |
gtgtatgagatagataaataagttttccaactaacctttg |
21263900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6847282 - 6847043
Alignment:
| Q |
1 |
tttcctacttgtgatatctcccgcccagtcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6847282 |
tttcctacttgtgatatctcccgcccagtcggcgtctgtatagccttcaacctgaagatgattattttttttgaacattaatccttttccaggcgaggat |
6847183 |
T |
|
| Q |
101 |
ttcaagtaccggagaatccgaattactgcattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6847182 |
ttcaagtaccggagaatccgaattactgcattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtc |
6847083 |
T |
|
| Q |
201 |
gtgtatgagatagatagataagttttccaactaacctttg |
240 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
6847082 |
gtgtatgagatagataaataagttttccaactaacctttg |
6847043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47804711 - 47804472
Alignment:
| Q |
1 |
tttcctacttgtgatatctcccgcccagtcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47804711 |
tttcctacttgtgatatctcccgcccagtcggcgtctgtatagccttcaacctgaagatgattattttttttgaacattaatccttttccaggcgaggat |
47804612 |
T |
|
| Q |
101 |
ttcaagtaccggagaatccgaattactgcattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804611 |
ttcaagtaccggagaatccgaattactgcattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtc |
47804512 |
T |
|
| Q |
201 |
gtgtatgagatagatagataagttttccaactaacctttg |
240 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
47804511 |
gtgtatgagatagataaataagttttccaactaacctttg |
47804472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38460506 - 38460739
Alignment:
| Q |
1 |
tttcctacttgtgatatctcccgcccagtcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggat |
100 |
Q |
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||||||| | ||||||||||| |||||||| ||||||||||||||||||| || | ||||||||| || |||||||| || ||||||||||| |||||| |
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| T |
38460506 |
tttcctattggtgatatctcctgcccagtcaacgtctgtatagccttcaacttgtacatgattattcttcgtgaacatcaaaccttttccaggtgaggat |
38460605 |
T |
|
| Q |
101 |
ttcaagtaccggagaatccgaattactgcattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtc |
200 |
Q |
| |
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||||| ||||| | || ||||| ||||||| ||||||||||| ||| || |||||||| || ||||||| |||||||| || || ||||| ||||||| |
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| T |
38460606 |
ttcaaataccgcaagattcgaatcactgcatccatgtgatctttactcgggttgtgcataaattgactcacgacacttaccgcatacgctatatcaggtc |
38460705 |
T |
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| Q |
201 |
gtgtatgagatagatagataagttttccaactaa |
234 |
Q |
| |
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||||||| |||| || || ||||| |||||||| |
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| T |
38460706 |
gtgtatgggataagtaaatgagtttgccaactaa |
38460739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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