View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_77 (Length: 238)
Name: NF18580_low_77
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 3128390 - 3128510
Alignment:
| Q |
73 |
aacattgccttttacataaaaaactaggaaaacataagaaccaaaactcgtgaaaaagcttatagtgtccattgtagaatgcagatagtcttttttctta |
172 |
Q |
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| T |
3128390 |
aacattgccttttaaatagtaaactaagaaaacataagaggcaaaactcatggaaaagcttacagtgtccaatatagaatgccgatagccttgtttctta |
3128489 |
T |
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| Q |
173 |
ctctcatttgaacaaacattt |
193 |
Q |
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| T |
3128490 |
ctctcatttgaacaaatattt |
3128510 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 2987889 - 2987807
Alignment:
| Q |
73 |
aacattgccttttacataaaaaactaggaaaacataagaaccaaaactcgtgaaaaagcttatagtgtccattgtagaatgca |
155 |
Q |
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| T |
2987889 |
aacatttccttttacatagaaaactatgaaaacataagaagcaaaactcgtgaaaaggcttatagtgtccactgtagaatgca |
2987807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 3291605 - 3291535
Alignment:
| Q |
73 |
aacattgccttttacataaaaaactaggaaaacataagaaccaaaactcgtgaaaaagcttatagtgtcca |
143 |
Q |
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|||||||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||| ||||||| |
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| T |
3291605 |
aacattgccttttacatagaaaactagaaaaacataagaagcaaaactcatgaaaaagcttacggtgtcca |
3291535 |
T |
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