View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_86 (Length: 214)
Name: NF18580_low_86
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 28211435 - 28211348
Alignment:
| Q |
109 |
tttaaggttgatgacaagtaccaatactcaagtgagaacataaaccttaaggttcatggatggataagtgcagagtctgaaacaattc |
196 |
Q |
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| T |
28211435 |
tttaaggttgatgacaagtaccaatactcaagtgagaacataaaccttaaggttcatggatggataagtgcagagtctgaaacaattc |
28211348 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 51473454 - 51473426
Alignment:
| Q |
1 |
cacgaggaccaaaagtgtaattaagcatt |
29 |
Q |
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| T |
51473454 |
cacgaggaccaaaagtgtaattaagcatt |
51473426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4636490 - 4636518
Alignment:
| Q |
1 |
cacgaggaccaaaagtgtaattaagcatt |
29 |
Q |
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| T |
4636490 |
cacgaggaccaaaagtgtaattaagcatt |
4636518 |
T |
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