View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_low_9 (Length: 475)
Name: NF18580_low_9
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 38785377 - 38785812
Alignment:
| Q |
16 |
atcaaacgatctaaatttcaagcttagtattttaaattttaagagcaaagacggattaagtaattttgacacaaaaatacgaaatttatgattggaaact |
115 |
Q |
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| T |
38785377 |
atcaaacgatctaaatttcaagcttagtattttagattttaagagcaaagacggattaagtaattttgacacaaaaatacgaaatttatgattggaaact |
38785476 |
T |
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| Q |
116 |
atgcttagttttgtgccttctgaagtttaatgttatcattatcaaataaaatcac--------aagtcaaaagaaaaagggtcatatatcatacaaaatt |
207 |
Q |
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| T |
38785477 |
atgcttagttttgtgccttctgaagtttaatgttatcattatcaaataaaatcagtaaatcaaaagtcaaaagaaaaagggtcatatatcatataaaatt |
38785576 |
T |
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| Q |
208 |
gagaagtgcattgtatttgtaccttggttttatcaatagtctgaaagaaatcacccaatgcgataaagtctcttaggcctaactttgtccttcttgatcc |
307 |
Q |
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| T |
38785577 |
gagaagtgcattgtatttgtaccttggttttatcaataatctgaaagaaatcacccaatgcgataaagtctcttaggcctaactttgtccttcttgatcc |
38785676 |
T |
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| Q |
308 |
caaaattgagatagtgctataaacaagcctccaacacccatccaccttccagtaatagaaacataacatgattatgaaagtttgtgtatgacaatcaata |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38785677 |
caaaattgagatagtgctataaacaagcctccaacacccatccaccttccagtaatagaaacataacatgattatgaaagtttgtgtatgacaattaata |
38785776 |
T |
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| Q |
408 |
tagtttnnnnnnntgtgatttaggcctcgacatcaa |
443 |
Q |
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| T |
38785777 |
tagtttaaaaaaatgtgatttaggcctcgacatcaa |
38785812 |
T |
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