View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18581_low_1 (Length: 534)
Name: NF18581_low_1
Description: NF18581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18581_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Complemental strand, 38441374 - 38440869
Alignment:
| Q |
11 |
atcatcattaaccatgtccacatgcatatatactttatataaatttaaggaaaatgattacaagcccaatcaaaaggattctgaccgtatgaattcctcc |
110 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38441374 |
atcatcattaatcatgtccacatgcata----ctttatataaatgtaaggaaaatcattacaagcccaatcaaaaggattctgaccgtatgaattcctcc |
38441279 |
T |
|
| Q |
111 |
ttgaagcatggttccaccactatagatttctataggaaacaagcaagttccatttgacgggtcttgtgttacaatagtggcagttccatcaaaattacat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38441278 |
ttgaagcatggttccaccactatagatttctataggaaacaagcaagttccatttgacgggtcttgtgttacaatagtggcagttccatcaaaactacat |
38441179 |
T |
|
| Q |
211 |
gcctccacactttgttcgttcatttgaaagtattgattgtaagcatgtgaagtattaccacgcacatccaaatttccacaagaacaaccaatacataagc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38441178 |
gcctccacactttgttcgttcatttgaaagtattgattgtaagcatatgaagtattaccacgcacatccaaatttccacaagaacaaccaatacataagc |
38441079 |
T |
|
| Q |
311 |
ttgtacaatcaccaactgcacaagcgtaacccaatggtccataaactgaactcaagttctttacctctttactcaaaacacaccatttatggtctaaata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38441078 |
ttgtacaatcaccaactgcacaagcgtaacccaatggtccataaaccgaactcaagttctttacctctttactcaaaacacaccatttatggtctaaata |
38440979 |
T |
|
| Q |
411 |
acgaactcctttggctccgataggcaatttatcttgtcctttgccagaaaaatcaataggaaacttaggttttccatcataacgaaaaatcccccaatga |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38440978 |
acgaactcctttggctccgataggcaatttatcttgtcctttgccagaaaaatcaataggaaacttaggttttccatcataacgaaaaatcccccaatga |
38440879 |
T |
|
| Q |
511 |
cgttcaaagt |
520 |
Q |
| |
|
|||||||||| |
|
|
| T |
38440878 |
cgttcaaagt |
38440869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 433 - 518
Target Start/End: Original strand, 43390622 - 43390707
Alignment:
| Q |
433 |
ggcaatttatcttgtcctttgccagaaaaatcaataggaaacttaggttttccatcataacgaaaaatcccccaatgacgttcaaa |
518 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||| ||||||||||| || |||||||| || ||| |||| ||||||||||||||||| |
|
|
| T |
43390622 |
ggcaatttttcttctcctttaccagaaaaatctataggaaacttcggctttccatcgtagcgataaattccccaatgacgttcaaa |
43390707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University