View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18582_high_2 (Length: 482)
Name: NF18582_high_2
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18582_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 25223937 - 25224410
Alignment:
| Q |
1 |
caattgtgacattctatcaaccataagctttgttaggtctaaaacttcttttggaagttatgtatgactttttatttagggagaaatcaagcatgacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
25223937 |
caattgtgacattctatcaaccataagctttgttaggtctaaaacttcttttggaagttatgtatgactttttattgagggagaagtcaagtatgacatg |
25224036 |
T |
|
| Q |
101 |
ttatctcagttgaatgtctattttgcattagtatattaaaataagttgtctacccttcctttaaataaacttacctgtagaagatctcctatattgacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
25224037 |
ttatctcagttgaatgtctattttgcattagcatattaaaataagttgtctaccattcctttaaataaacttacttgtagaagatctcctatattgacaa |
25224136 |
T |
|
| Q |
201 |
caagagctccgtgcacaggagcaacatcaaaccattgattatctctaagaacttgaagaccacccaattgttcttgcagaactattgtcataaaagaagg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25224137 |
caagagctccgtgcacaggagcaacatcaaaccattgattatctctaagaacttgaagaccacccaattgttcttgtagaactattgtcataaaagaagg |
25224236 |
T |
|
| Q |
301 |
atcagtgtgttcagatgtacccatggttaattcaggttcaggacatggtggataataatgacgttgaataaaaagtccttctaagtaattcctttctttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25224237 |
atcagtgtgttcagatgtacccatggttaattcaggttcaggacatggtggataataatgaccttgaataaaaagtccttctaagtaattcctttctttg |
25224336 |
T |
|
| Q |
401 |
aggtaagatagatccaatccaagagtctctgagaataactcaagtatggtaccgcctaatgcctttattttctt |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25224337 |
aggtaagatagatccaatccaagagtctctgagaataactcaagtatggtaccgcctaatgcctttattttctt |
25224410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 461
Target Start/End: Complemental strand, 26171318 - 26170879
Alignment:
| Q |
22 |
cataagctttgttaggtctaaaacttcttttg-gaagttatgtatgactttttatttagggagaaatcaagcatgacatgttatctcagttgaatgtcta |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||| | ||||||| |||| |||||||| || ||| | ||| ||||||| ||||||| || ||||| |
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|
| T |
26171318 |
cataagctttgttaggtctaaaattgctttttcgaaggttggtatgacctttt-tttagggataagtcaggtatgtcatgttagctcagttaaaagtcta |
26171220 |
T |
|
| Q |
121 |
ttttgcattagtatattaaaataagttgtctacccttcctttaaataaacttacctgtagaagatctcctatattgacaacaagagctccgtgcacagga |
220 |
Q |
| |
|
|||||| ||| ||||| |||||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
26171219 |
ttttgctttaacatatttaaataagtcatctaaccttcctttaaataaatttacctgtagaagatctcctatgttgacaacaagagctccgtgcacagga |
26171120 |
T |
|
| Q |
221 |
gcaacatcaaaccattgattatctctaagaacttgaagaccacccaattgttcttgcagaactattgtcataaaagaaggatcagtgtgttcagatgtac |
320 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||| || | || |
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|
| T |
26171119 |
gcaacattaaaccattgattatctcgaagaacttgaagaccagccaattgttcttgtagaactattgtcatgaaagcaggatcagtgtgtgtggacgcac |
26171020 |
T |
|
| Q |
321 |
ccatggttaattcaggttcaggacatggtggataataatgacgttgaataaaaagtccttctaagtaattcctttctttgaggtaagatagatccaatcc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
26171019 |
ccatggttaattcaggttcaggacatggtggataataatgaccttgaataaaaattccttcgaagtaattcctttctttgaggtaagatggatgcaatcc |
26170920 |
T |
|
| Q |
421 |
aagagtctctgagaataactcaagtatggtaccgcctaatg |
461 |
Q |
| |
|
||||||||| || ||||||||| |||||||| |||||||| |
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|
| T |
26170919 |
aagagtctccgaaaataactcagatatggtactgcctaatg |
26170879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 181 - 471
Target Start/End: Complemental strand, 26397230 - 26396940
Alignment:
| Q |
181 |
aagatctcctatattgacaacaagagctccgtgcacaggagcaacatcaaaccattgattatctctaagaacttgaagaccacccaattgttcttgcaga |
280 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| ||| | || ||||||||| || |||||||||||||||||||||||| || || ||| |
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|
| T |
26397230 |
aagatctcctacgttgacaacaagagctccatgcacaggagaaacgttaacccattgattctcatgaagaacttgaagaccacccaattgatcctgtaga |
26397131 |
T |
|
| Q |
281 |
actattgtcataaaagaaggatcagtgtgttcagatgtacccatggttaattcaggttcaggacatggtggataataatgacgttgaataaaaagtcctt |
380 |
Q |
| |
|
||||||| ||| ||| |||||||||||| | |||| |||||| ||||| || ||||||||||| | ||| |||||||||| |||| | ||||| ||| |
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|
| T |
26397130 |
actattgccatgaaaccaggatcagtgtgcttggatgcacccatagttaactctggttcaggacaagatgggtaataatgaccctgaacataaagtgctt |
26397031 |
T |
|
| Q |
381 |
ctaagtaattcctttctttgaggtaagatagatccaatccaagagtctctgagaataactcaagtatggtaccgcctaatgcctttatttt |
471 |
Q |
| |
|
||||| ||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||||| |
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|
| T |
26397030 |
ctaagcaattcaattctttgagataagatggatccaatccaagagcctctgagaataactcaaatatagtattacctaatgccattatttt |
26396940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 1094367 - 1094328
Alignment:
| Q |
171 |
ttacctgtagaagatctcctatattgacaacaagagctcc |
210 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |
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|
| T |
1094367 |
ttacctgtagaagatctcctatgtttacaacaagagctcc |
1094328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 154 - 474
Target Start/End: Complemental strand, 8350217 - 8349897
Alignment:
| Q |
154 |
ccttcctttaaataaacttacctgtagaagatctcctatattgacaacaagagctccgtgcacaggagcaacatcaaaccattgattatctctaagaact |
253 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
8350217 |
ccttcctttaaataggcttacctgtagaagatctcctatgttgacaacaagacctccgtgcgcaggagcaacatcaaaccattgattatctctaagaact |
8350118 |
T |
|
| Q |
254 |
tgaagaccacccaattgttcttgcagaactattgtcataaaagaaggatcagtgtgttcagatgtacccatggttaattcaggttcaggacatggtggat |
353 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8350117 |
tgaagaccacccaattgttcttgtagaactattgtcatgaaagaaggatcagtgtgttcggacgtacccatggttaattcaggttcaggacatggtggat |
8350018 |
T |
|
| Q |
354 |
aataatgacgttgaataaaaagtccttctaagtaattcctttctttgaggtaagatagatccaatccaagagtctctgagaataactcaagtatggtacc |
453 |
Q |
| |
|
||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8350017 |
aataatgaccttgaatgaaaagtccgtctaggtaattcctttctttgaggtaagatagatccaatccaagagtctctgagaataactcaagtatggtacc |
8349918 |
T |
|
| Q |
454 |
gcctaatgcctttattttctt |
474 |
Q |
| |
|
||||||| | |||||||||| |
|
|
| T |
8349917 |
ccctaatgtcgttattttctt |
8349897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 8350379 - 8350256
Alignment:
| Q |
22 |
cataagctttgttaggtctaaaacttcttttggaagttatgtatgactttttatttagggagaaatcaagcatgacatgttatctcagttgaatgtctat |
121 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| ||||| |||||| |||| |||||| ||| | ||||||||||| |||| || ||| ||| |
|
|
| T |
8350379 |
cataagctttgttaggtctaaaatttattttggcagtttggtatggcttttt-tttatggagaagtcaggtatgacatgttagctcaattaaataaatat |
8350281 |
T |
|
| Q |
122 |
tttgcattagtatattaaaataagt |
146 |
Q |
| |
|
||||||||| ||||| |||||||| |
|
|
| T |
8350280 |
tttgcattaacatatttaaataagt |
8350256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 19891020 - 19890959
Alignment:
| Q |
320 |
cccatggttaattcaggttcaggacatggtggataataatgacgttgaataaaaagtccttc |
381 |
Q |
| |
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||||| |||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||| |
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|
| T |
19891020 |
cccatagttaattcaggttcaggacatgctggatagtaatgaccttgaataaagagtccttc |
19890959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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