View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18582_high_5 (Length: 256)
Name: NF18582_high_5
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18582_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 34410555 - 34410382
Alignment:
| Q |
20 |
atataagatcaaacaaatttatgctcgttaacttagtaaataattcaatcattgcttttacttacaaaatatgatgttggtgcaaaggcaaaacctccta |
119 |
Q |
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| T |
34410555 |
atataagatcaaacaaatttatgctcgttaacttggtaaataattcaatcattgtttttacttacaaaatatgatgttggtgcaaaggcaaaacctccta |
34410456 |
T |
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| Q |
120 |
gaaatcctagaagagaaccaaagaatggtatgcatattccaaccaccatggtaaaggctgaaacaatatatagg |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34410455 |
gaaatcctagaagagaaccaaagaatggtatgcatattccgaccaccatggtaaaggctgaaacaatatatagg |
34410382 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 38821010 - 38821063
Alignment:
| Q |
94 |
tgttggtgcaaaggcaaaacctcctagaaatcctagaagagaaccaaagaatgg |
147 |
Q |
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|||||| || |||||||| ||||| || ||||| |||||||||||||||||||| |
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| T |
38821010 |
tgttggggctaaggcaaaccctccgaggaatccaagaagagaaccaaagaatgg |
38821063 |
T |
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