View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18582_low_1 (Length: 568)
Name: NF18582_low_1
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18582_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 52671106 - 52671241
Alignment:
| Q |
65 |
gtacttcaatcttcttt--atagttttgcttcagttttacttggaagaagagatatcatatgtaaaacaaaattaaaaaagtagagaagattatactagt |
162 |
Q |
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| T |
52671106 |
gtacttcaatcttcttttaagagttttgcatcagttttacttggaagaagagatatcatatgtaaaacaaaattaaaaaagtagagaagatta---tagt |
52671202 |
T |
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| Q |
163 |
tgacaacattatgtaaagcataataatggtaataatatg |
201 |
Q |
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| T |
52671203 |
tggcaacattatgtaaagcataataatggtaataatatg |
52671241 |
T |
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Target: chr2 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 318 - 492
Target Start/End: Complemental strand, 14360902 - 14360724
Alignment:
| Q |
318 |
atcaactttgtctctctcattgcaagcaccctctttcagacttcaaatcctttctctttcaatgggtttgaaa----gcttaatattaataatcacaggg |
413 |
Q |
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| T |
14360902 |
atcaactttatctctcttgttgcaaggtccctctttcagacttcatatcttttctctttcaatgggtttgaaattaagcttaatactaataatcagagag |
14360803 |
T |
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| Q |
414 |
ctttgaagtaagaacataaagagttttcattcacaatcccaactcccaaagaaaccaaagccaaaagtatatcatattc |
492 |
Q |
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| T |
14360802 |
ttttgaagtaagaacataaaaagtctctattcacaatctcaactcccaaataaaccaaagccaaaattataccatattc |
14360724 |
T |
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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 17591286 - 17591229
Alignment:
| Q |
264 |
tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca |
321 |
Q |
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| T |
17591286 |
tcttccacccactatcacccttctctctcatccatgccacccaccaccagcaacatca |
17591229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 36912957 - 36912920
Alignment:
| Q |
232 |
tcttatgatagtctcttcacatttgaattttttcttcc |
269 |
Q |
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| T |
36912957 |
tcttatgatagtctcttcacacttgatttttttcttcc |
36912920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 19130296 - 19130239
Alignment:
| Q |
264 |
tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca |
321 |
Q |
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| T |
19130296 |
tcttccacccactatcacccttctctctcctccatgccacccaccacctgcaacatca |
19130239 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 14735503 - 14735560
Alignment:
| Q |
264 |
tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca |
321 |
Q |
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| T |
14735503 |
tcttccacccactatcatccttctctctcatccatgccacccactaccagcaacatca |
14735560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 14735440 - 14735477
Alignment:
| Q |
232 |
tcttatgatagtctcttcacatttgaattttttcttcc |
269 |
Q |
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| T |
14735440 |
tcttatgatagtctcttcacacttgatttttttcttcc |
14735477 |
T |
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