View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18582_low_10 (Length: 250)
Name: NF18582_low_10
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18582_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4365419 - 4365314
Alignment:
| Q |
1 |
atgttttatacctttctataaggtattgaatgatagatatgattgtctaaatgtaaattctatgtgaatttggacggctttgtccttttatgtattgaat |
100 |
Q |
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| T |
4365419 |
atgttttatacctttctataaggtattcaatgatagatatgattgtctaaatgtaaattctatgtgaatttggacggctttgtccttttatgtattgaat |
4365320 |
T |
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| Q |
101 |
tgtata |
106 |
Q |
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| |||| |
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| T |
4365319 |
tatata |
4365314 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 4365321 - 4365272
Alignment:
| Q |
190 |
attatatagcttattatccttattataagtgagaatatatggtccttcat |
239 |
Q |
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| T |
4365321 |
attatatagcttattatccttattataagtgagaatatatggtccttcat |
4365272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 33652296 - 33652116
Alignment:
| Q |
46 |
tctaaatgtaaattctatgtgaatttggacggct-----ttgtccttttatgtattgaattgtataagctatattagtgaaatgttaaagtttattagtt |
140 |
Q |
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||||||| |||||||||||||||||| || ||| ||||||||||| |||| |||||||||||| | || |||||| |||||| ||||||||| |
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| T |
33652296 |
tctaaatataaattctatgtgaatttagaatgctttgtcttgtccttttaagtatcgaattgtataagttcatgtaatgaaatattaaaggttattagtt |
33652197 |
T |
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| Q |
141 |
gaaattgaggattaaaggcataccttgcatatgaatgtttcttatg--tatattatatagcttattatccttattataagt |
219 |
Q |
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| T |
33652196 |
gaaattgaggattaaagacataccttgcgtatgaatgtttcttatgtatatattatatagtatattatacatattataagt |
33652116 |
T |
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