View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18582_low_3 (Length: 440)
Name: NF18582_low_3
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18582_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 35 - 348
Target Start/End: Original strand, 30411996 - 30412308
Alignment:
| Q |
35 |
caacaacaaaatataacataaaacttacaattttacttctaatctttttcccattgccnnnnnnngtgaaggtcacctaactaaagagagtgatttatac |
134 |
Q |
| |
|
||||||||||||| | ||||| || |||||||||||| |||| ||||||| ||||| | |||||| | ||||||| || |||| |||| ||||| |
|
|
| T |
30411996 |
caacaacaaaataaagcataatacctacaattttactcctaacctttttctcattgtcattttt-gtgaagattacctaaccaaggagaatgatgtatac |
30412094 |
T |
|
| Q |
135 |
aattttggggttgttctactggaaattatgtctggcaaacgtgcagtggataaaaacaggccacttcgggaacaaaatttagtcgaatgggccaagccat |
234 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||| || |||||||||||||||| |
|
|
| T |
30412095 |
aattttggggttgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttggttgaatgggccaagccat |
30412194 |
T |
|
| Q |
235 |
tactcaacagcaaacgtaaaatctctcaagtcatggatgttcgtatagaaggccaatactcttcgcgcgaagcaatgaaattagctcatattgtaattca |
334 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
30412195 |
tactcaacaacaaacataaaatctctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattagctcatattataattca |
30412294 |
T |
|
| Q |
335 |
atgtctgtctgaaa |
348 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30412295 |
atgtctgtctgaaa |
30412308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 30409476 - 30409668
Alignment:
| Q |
5 |
atgaaggaattaatgattattacatcttatcaacaacaaaatataacataaaacttacaattttacttctaatctttttcccattgccnnnnnnngtgaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30409476 |
atgaaggaattaatgattattacatcttatcaacaacaaaatataacataaaacttacaattttacttctaatctttttcccattgcctttttttgtgaa |
30409575 |
T |
|
| Q |
105 |
ggtcacctaactaaagagagtgatttatacaattttggggttgttctactggaaattatgtctggcaaacgtgcagtggataaaaacaggcca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| | ||||| ||||||||| |
|
|
| T |
30409576 |
ggtcacctaactaaagagagtgatttatacaattttggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacaggcca |
30409668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 100 - 343
Target Start/End: Original strand, 30423214 - 30423457
Alignment:
| Q |
100 |
gtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttctactggaaattatgtctggcaaacgtgcagtggataaaaacaggccact |
199 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | |||| ||| ||||||||||| || ||||||||||| ||||| |||| | ||||||||||| | || |
|
|
| T |
30423214 |
gtgaaggtcacctaactaaaaagagcgatgtctacagtttcggggttgttctcctagaaattatgtcaggcaagcgtgtattggataaaaaccgaccgtc |
30423313 |
T |
|
| Q |
200 |
tcgggaacaaaatttagtcgaatgggccaagccattactcaacagcaaacgtaaaatctctcaagtcatggatgttcgtatagaaggccaatactcttcg |
299 |
Q |
| |
|
| | || || ||||||| | |||||||||||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
30423314 |
tggagagcatgatttagttgcatgggccaagccattactcatgagcaaacgtaagatttctcaagttatggatgctcgtatagaaggccaatactcatcg |
30423413 |
T |
|
| Q |
300 |
cgcgaagcaatgaaattagctcatattgtaattcaatgtctgtc |
343 |
Q |
| |
|
|| |||||||| ||| |||||||| ||| ||||| ||||||||| |
|
|
| T |
30423414 |
cgtgaagcaattaaagtagctcatgttgcaattcgatgtctgtc |
30423457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 344
Target Start/End: Original strand, 30405460 - 30405704
Alignment:
| Q |
100 |
gtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttctactggaaattatgtctggcaaacgtgcagtggataaaaacaggccact |
199 |
Q |
| |
|
||||||||||| | || ||| |||||||| ||||| ||||||||||||||| |||||||||||||| || ||||||||| ||||| | |||||||||| |
|
|
| T |
30405460 |
gtgaaggtcacttgaccaaaaagagtgatgtatacggttttggggttgttctcctggaaattatgtcgggaaaacgtgcattggattataacaggccacg |
30405559 |
T |
|
| Q |
200 |
tcgggaacaaaatttagtcgaatgggccaagccattactcaacagcaaacgtaaaatctctcaagtcatggatgttcgtatagaaggccaatactcttcg |
299 |
Q |
| |
|
||||| | ||||||| | ||||| ||||||||| | || |||| || |||| ||||||||||||| |||||||||| |||||||| || |
|
|
| T |
30405560 |
atgggaaaatgatttagttgtgtgggcgcggccattacttatcaacaaagaaaagatctatcaagtcatggattcctgtatagaaggtcaatactcgccg |
30405659 |
T |
|
| Q |
300 |
cgcgaagcaatgaaattagctcatattgtaattcaatgtctgtct |
344 |
Q |
| |
|
| ||||||||| | | |||| ||||| |||||||||||||||| |
|
|
| T |
30405660 |
catgaagcaatggaggtggctcgtattgcaattcaatgtctgtct |
30405704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 344
Target Start/End: Original strand, 30402374 - 30402618
Alignment:
| Q |
100 |
gtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttctactggaaattatgtctggcaaacgtgcagtggataaaaacaggccact |
199 |
Q |
| |
|
||||||| ||| | || ||| |||||||| ||||| |||||||||| |||| |||||||||||||| || ||||||||| |||| | | ||||||| |
|
|
| T |
30402374 |
gtgaaggccacttgaccaaaaagagtgatatatacggttttggggttcttctcctggaaattatgtcaggaaaacgtgcatgggattatgataggccacg |
30402473 |
T |
|
| Q |
200 |
tcgggaacaaaatttagtcgaatgggccaagccattactcaacagcaaacgtaaaatctctcaagtcatggatgttcgtatagaaggccaatactcttcg |
299 |
Q |
| |
|
|| ||||| |||||||| | ||| | ||||||||||| || |||| || |||| ||||||||||||| | |||||||||||||||||| || |
|
|
| T |
30402474 |
acgagaacataatttagttgtgtggtcgcagccattactcgtcaacaaagacaagatctatcaagtcatggattcccatatagaaggccaatactcgccg |
30402573 |
T |
|
| Q |
300 |
cgcgaagcaatgaaattagctcatattgtaattcaatgtctgtct |
344 |
Q |
| |
|
| ||||||||| | | |||| ||||| |||||||||||||||| |
|
|
| T |
30402574 |
catgaagcaatggaggtggctcgtattgcaattcaatgtctgtct |
30402618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 30409691 - 30409738
Alignment:
| Q |
275 |
tcgtatagaaggccaatactcttcgcgcgaagcaatgaaattagctca |
322 |
Q |
| |
|
|||||||||||| |||||||| ||| | |||||||||||||||||||| |
|
|
| T |
30409691 |
tcgtatagaaggacaatactcatcgagtgaagcaatgaaattagctca |
30409738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 34150945 - 34151075
Alignment:
| Q |
121 |
agagtgatttatacaattttggggttgttctactggaaattatgtctggcaaacgtgcagtggataaaaacaggccacttcgggaacaaaatttagtcga |
220 |
Q |
| |
|
|||||||| |||||| ||| || ||||| || || |||||||||||||| ||||| ||| | || || ||||||||| | ||||||| |||||| | || |
|
|
| T |
34150945 |
agagtgatgtatacagtttcggcgttgtgctccttgaaattatgtctggaaaacgcgcactcgacaacaacaggccatctggggaacacaatttaattga |
34151044 |
T |
|
| Q |
221 |
atgggccaagccattactcaacagcaaacgt |
251 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |
|
|
| T |
34151045 |
atgggccaaaccatacctcaacagcaaacgt |
34151075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 31446550 - 31446632
Alignment:
| Q |
255 |
atctctcaagtcatggatgttcgtatagaaggccaatactcttcgcgcgaagcaatgaaattagctcatattgtaattcaatg |
337 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | || |||||||||||| |||||| |||||||||||||| |
|
|
| T |
31446550 |
atctctcaagtcatggattcagatatagaaggccaatactcattgcttgaagcaatgaaagtagctcgcattgtaattcaatg |
31446632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University