View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18582_low_4 (Length: 439)

Name: NF18582_low_4
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18582_low_4
NF18582_low_4
[»] chr6 (2 HSPs)
chr6 (16-289)||(19047478-19047750)
chr6 (324-420)||(19047385-19047481)
[»] chr1 (16 HSPs)
chr1 (243-364)||(5522009-5522129)
chr1 (211-338)||(32360734-32360860)
chr1 (192-277)||(40239021-40239107)
chr1 (208-305)||(33610314-33610410)
chr1 (92-149)||(45111137-45111194)
chr1 (206-288)||(9938024-9938105)
chr1 (280-338)||(32505546-32505604)
chr1 (277-338)||(52293789-52293850)
chr1 (277-362)||(52293950-52294034)
chr1 (284-340)||(30673407-30673463)
chr1 (284-362)||(5521822-5521900)
chr1 (299-338)||(28055764-28055803)
chr1 (284-338)||(45111137-45111191)
chr1 (207-276)||(5739641-5739710)
chr1 (89-130)||(16500554-16500595)
chr1 (92-149)||(32360895-32360952)
[»] chr4 (15 HSPs)
chr4 (192-338)||(29172258-29172403)
chr4 (263-338)||(7741109-7741184)
chr4 (244-338)||(42158894-42158988)
chr4 (237-307)||(43046994-43047064)
chr4 (92-149)||(29172449-29172506)
chr4 (277-338)||(41038899-41038960)
chr4 (244-307)||(7556610-7556673)
chr4 (208-314)||(37149479-37149583)
chr4 (243-333)||(34408379-34408469)
chr4 (277-361)||(51480551-51480633)
chr4 (207-266)||(31742631-31742690)
chr4 (208-261)||(26709581-26709634)
chr4 (277-338)||(29172445-29172506)
chr4 (88-136)||(12694961-12695009)
chr4 (192-275)||(51480645-51480729)
[»] chr3 (17 HSPs)
chr3 (192-358)||(49559406-49559572)
chr3 (276-338)||(34072996-34073058)
chr3 (243-361)||(34073128-34073244)
chr3 (242-303)||(55160032-55160093)
chr3 (277-348)||(49559295-49559367)
chr3 (192-275)||(31142981-31143064)
chr3 (193-280)||(47183881-47183969)
chr3 (217-293)||(22415467-22415542)
chr3 (286-358)||(30807418-30807490)
chr3 (277-340)||(36961283-36961346)
chr3 (192-269)||(27007844-27007921)
chr3 (284-362)||(27094938-27095015)
chr3 (277-314)||(27007825-27007862)
chr3 (277-362)||(27007951-27008035)
chr3 (92-149)||(30807413-30807470)
chr3 (195-267)||(28880169-28880241)
chr3 (255-338)||(36961086-36961167)
[»] chr7 (11 HSPs)
chr7 (243-363)||(18880453-18880572)
chr7 (254-338)||(1461359-1461445)
chr7 (244-312)||(9002710-9002778)
chr7 (243-292)||(38919601-38919650)
chr7 (217-293)||(37534017-37534093)
chr7 (281-328)||(31070313-31070360)
chr7 (243-338)||(44933541-44933636)
chr7 (92-146)||(1461215-1461269)
chr7 (92-150)||(38223335-38223393)
chr7 (92-146)||(44933582-44933636)
chr7 (277-358)||(31893531-31893611)
[»] chr8 (14 HSPs)
chr8 (192-340)||(44996787-44996938)
chr8 (192-307)||(24335132-24335246)
chr8 (206-348)||(29362100-29362241)
chr8 (92-130)||(9577094-9577132)
chr8 (92-146)||(9840020-9840074)
chr8 (273-335)||(27111025-27111087)
chr8 (88-150)||(33364795-33364857)
chr8 (277-363)||(9839996-9840081)
chr8 (284-338)||(29362330-29362384)
chr8 (278-339)||(2230652-2230713)
chr8 (281-338)||(17707830-17707887)
chr8 (303-340)||(24543198-24543235)
chr8 (210-278)||(9577145-9577212)
chr8 (277-357)||(24550975-24551054)
[»] chr5 (10 HSPs)
chr5 (277-364)||(321835-321921)
chr5 (207-261)||(14023343-14023397)
chr5 (276-338)||(34222320-34222382)
chr5 (92-130)||(34444922-34444960)
chr5 (277-338)||(34445136-34445197)
chr5 (284-364)||(11494800-11494879)
chr5 (284-347)||(23251658-23251720)
chr5 (88-130)||(7119141-7119183)
chr5 (92-146)||(34445143-34445197)
chr5 (207-247)||(15408605-15408645)
[»] chr2 (4 HSPs)
chr2 (277-338)||(10673819-10673880)
chr2 (208-275)||(41695128-41695195)
chr2 (92-146)||(16103235-16103289)
chr2 (284-340)||(16103233-16103289)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 19047750 - 19047478
Alignment:
Q  16 atacatgcaaaa-gtgtcgactctttaaaagataaaacttctaaagtattgataag-gtaaaatacnnnnnnnnatcatttaagtttgacaaaaatatcg 113  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||  |||||||||        ||||||||||||||||||||||||||    
T  19047750 atacatgcaaaaagtgtcgactctttaaaagataaaacttgtaaagtattgaaaaaagtaaaatacttttttttatcatttaagtttgacaaaaatatcg 19047651  T
Q  114 gagtagtcctttaagttggttaagtttcaaataagttaagnnnnnnnacgtttcgaataggtctttaagnnnnnnnnnaagtttcaaatatgtttttaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||       | ||||| ||||| ||||||||         ||||||||||||||||||||||    
T  19047650 gagtagtcctttaagttggttaagtttcaaataagttaagttttt--atgtttccaatagctctttaagtttttttt-aagtttcaaatatgtttttaag 19047554  T
Q  214 ttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttg 289  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| || ||||||    
T  19047553 ttattaatttaatgcatctattagaagtattttaagtttcaaatagattcttaaaaaagtaataagaacatatttg 19047478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 19047481 - 19047385
Alignment:
Q  324 tttgtcaaacttaaaaggaccaaaaaagatatttggcctattgaaaataatatcaagatatatgtgtttcttgattcacataatctaaattgcatat 420  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19047481 tttgtcaaacttaaaaggatcaaaaaagatatttagcctattgaaaataatatcaagatatatgtgtttcttgattcacataatctaaattgcatat 19047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 364
Target Start/End: Original strand, 5522009 - 5522129
Alignment:
Q  243 ttttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaagga 342  Q
    |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||||||| ||||||    
T  5522009 ttttaagtttcaaataggtccttaaaagggtaataaggacctatttgaaacttaaaaaacttaaaggactaacctggtagttttgtcaaactt-aaagga 5522107  T
Q  343 ccaaaaaagatatttggcctat 364  Q
    |||||| |  ||||||||||||    
T  5522108 ccaaaagatgtatttggcctat 5522129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 338
Target Start/End: Complemental strand, 32360860 - 32360734
Alignment:
Q  211 aagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaagga 310  Q
    ||||| ||||||||||||| |||||  || | |||||| ||| |||||  ||| ||||||| |||||||||| ||||| |||| ||| ||| ||||||||    
T  32360860 aagttcttaatttaatgcacctatttaaaattttttaagttttaaatatattcataaaaag-taataaggacttatttaaaacctaaaaaatttaaagga 32360762  T
Q  311 ctaacctattatttttgtcaaacttaaa 338  Q
    ||||| || |||||||||||||||||||    
T  32360761 ctaacttaatatttttgtcaaacttaaa 32360734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 40239107 - 40239021
Alignment:
Q  192 aagtttcaaatatgttttt-aagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaata 277  Q
    |||||||||||| |||||| ||||| |||||||||||||  ||||   ||| |||||||||| |||||| |||||||||||||||||    
T  40239107 aagtttcaaataagttttttaagttgttaatttaatgcacatatttatagttttttaaattttaaatagattcttaaaaaggtaata 40239021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 33610410 - 33610314
Alignment:
Q  208 tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaactta 305  Q
    |||||||| ||||||||||||| |||||  |||| |||||  ||| ||||| || ||||||| |||||||||||||||||| |||||| | |||||||    
T  33610410 tttaagttgttaatttaatgcacctatttaaagt-ttttatgttttaaataagtccttaaaagggtaataaggacctatttaaaacattaaaaactta 33610314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 45111137 - 45111194
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaataagt 149  Q
    ||||||||||||||||||| | | ||||| ||||||||| ||||||||||||||||||    
T  45111137 tttaagtttgacaaaaatagcagggtagttctttaagtttgttaagtttcaaataagt 45111194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 9938024 - 9938105
Alignment:
Q  206 tttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctattt 288  Q
    |||||||||| |||||||| |||| |||||  |||| |||||| ||| |||||| | ||||||| ||||||||||||||||||    
T  9938024 tttttaagttgttaatttagtgcacctatttaaagt-ttttaagttttaaatagatccttaaaatggtaataaggacctattt 9938105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 32505546 - 32505604
Alignment:
Q  280 gacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    |||||||||||||| ||| |||||||||||||||||| | |||||| |||||| |||||    
T  32505546 gacctatttgaaacttaaaaaacttaaaggactaacccaatattttcgtcaaagttaaa 32505604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 52293850 - 52293789
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||||||||||||||| ||| |||| |||||||||||||   ||||||||||||| |||||    
T  52293850 aaggacctatttgaaacttaaaaaacgtaaaggactaacccggtatttttgtcaaaattaaa 52293789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 52293950 - 52294034
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggcct 362  Q
    ||||| ||||||||||| ||| |||||||||||||||||    ||||||||||| | || |||||||||||| || ||||||||||    
T  52293950 aaggatctatttgaaacttaaaaaacttaaaggactaacacggtatttttgtcaga-tttaaaggaccaaaagaggtatttggcct 52294034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 30673407 - 30673463
Alignment:
Q  284 tatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaag 340  Q
    |||||||||| ||| |||||||||| ||||||  | |||||||||||||||||||||    
T  30673407 tatttgaaacttaagaaacttaaagaactaactcagtatttttgtcaaacttaaaag 30673463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 5521900 - 5521822
Alignment:
Q  284 tatttgaaacataataaacttaaa-ggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggcct 362  Q
    |||||||||| ||| ||||||||| || ||||| || |||||||||||||||| |||||||||||| || ||||| ||||    
T  5521900 tatttgaaacttaacaaacttaaaaggtctaacatagtatttttgtcaaactt-aaaggaccaaaagagttattttgcct 5521822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 28055803 - 28055764
Alignment:
Q  299 aaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  28055803 aaacttaaaggactaacctggtatttttgtcaaacttaaa 28055764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 45111191 - 45111137
Alignment:
Q  284 tatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    |||||||||| ||| |||||||||| |||| |||  |||||||||||||||||||    
T  45111191 tatttgaaacttaacaaacttaaagaactaccctgctatttttgtcaaacttaaa 45111137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 5739710 - 5739641
Alignment:
Q  207 ttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaat 276  Q
    ||||||||| ||||||| ||| | || || ||||| |||||| |||||||||  ||||||||||||||||    
T  5739710 ttttaagttgttaatttgatgtacctgtttgaagttttttaagtttcaaataaattcttaaaaaggtaat 5739641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 16500595 - 16500554
Alignment:
Q  89 tcatttaagtttgacaaaaatatcggagtagtcctttaagtt 130  Q
    ||||||||||||||||||||| | ||| ||||||||||||||    
T  16500595 tcatttaagtttgacaaaaatcttggattagtcctttaagtt 16500554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 32360952 - 32360895
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaataagt 149  Q
    ||||| ||||| ||||||||||||||| || | |||||| ||||| ||||||||||||    
T  32360952 tttaaatttgataaaaatatcggagtaatcttctaagtttgttaaatttcaaataagt 32360895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 338
Target Start/End: Complemental strand, 29172403 - 29172258
Alignment:
Q  192 aagtttcaaatatgt-ttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttga 290  Q
    ||||||||| ||||| ||||||| | ||||||||||||| ||||| ||||| |||||| |||||||||||| ||||||| |||||||||||||| |||||    
T  29172403 aagtttcaagtatgtcttttaagctgttaatttaatgcaactatttgaagt-ttttaagtttcaaataggtccttaaaagggtaataaggacctctttga 29172305  T
Q  291 aacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    || || | ||||||||| ||| ||||   |||||||||||||||||||    
T  29172304 aa-attaaaaacttaaaagacaaaccggatatttttgtcaaacttaaa 29172258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 7741184 - 7741109
Alignment:
Q  263 cttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||||| |||||||||||| |||||||||| ||| |||| |||| |||||| ||| |||||||||||||||||||    
T  7741184 cttaaaagggtaataaggacttatttgaaacttaaaaaacataaaagactaatctagtatttttgtcaaacttaaa 7741109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 42158894 - 42158988
Alignment:
Q  244 tttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||| |||||||| ||| ||||||| |||||||||||||||||| |||| ||| |||||||||| | |||||   || ||||||||||||||||    
T  42158894 tttaagtttcaaattggtccttaaaagggtaataaggacctattttaaacttaaaaaacttaaagaaataacccgatacttttgtcaaacttaaa 42158988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 43047064 - 43046994
Alignment:
Q  237 gaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaa 307  Q
    ||||| |||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||||    
T  43047064 gaagttttttaagtttcaaataggttcttaaaaaggtaataaagacctatttaaaacttaaaaaaattaaa 43046994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 29172506 - 29172449
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaataagt 149  Q
    ||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||    
T  29172506 tttaagtttgacaaaaataccggggtagtactttaagtttgttaagtttcaaataagt 29172449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 41038899 - 41038960
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| | |||||||||||||||||    
T  41038899 aaggacctatttgaaacttaaaaaatttaaaggactaacctaatgtttttgtcaaacttaaa 41038960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 7556673 - 7556610
Alignment:
Q  244 tttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaa 307  Q
    ||||||||||||||| ||  |||||||||||||||||| |||||| |||||||| |||||||||    
T  7556673 tttaaatttcaaataagtcattaaaaaggtaataaggatctatttaaaacataaaaaacttaaa 7556610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 37149479 - 37149583
Alignment:
Q  208 tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaa 307  Q
    ||||| || |||||||||| |||||||| ||||| |||||  ||||||||| || ||||||| ||||||||| ||||||||||||| |||  ||| ||||    
T  37149479 tttaatttgttaatttaattcatctatttgaagt-ttttatgtttcaaatatgtccttaaaagggtaataagaacctatttgaaacttaa-gaacgtaaa 37149576  T
Q  308 ggactaa 314  Q
    |||||||    
T  37149577 ggactaa 37149583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 34408379 - 34408469
Alignment:
Q  243 ttttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaac 333  Q
    ||||||||||| ||||  | || ||| |||||||||| || | ||| |||| ||| |||||||||||| ||||| ||||||||||||||||    
T  34408379 ttttaaatttctaataaatcctaaaataggtaataagaacatgtttaaaacttaaaaaacttaaaggattaacccattatttttgtcaaac 34408469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 361
Target Start/End: Complemental strand, 51480633 - 51480551
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggcc 361  Q
    ||||||||||||||||| ||| |||||||||||||| |||   |||||||  ||||||| ||||||| ||||||| |||||||||    
T  51480633 aaggacctatttgaaacttaaaaaacttaaaggact-acccggtatttttaacaaactt-aaaggacaaaaaaaggtatttggcc 51480551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 31742631 - 31742690
Alignment:
Q  207 ttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttctta 266  Q
    ||||||||| ||||||||||||| | ||| ||||| |||||| |||||||||||| ||||    
T  31742631 ttttaagttgttaatttaatgcaccaatttgaagttttttaagtttcaaataggtcctta 31742690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 26709634 - 26709581
Alignment:
Q  208 tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggt 261  Q
    ||||||||||| ||||||||||  |||| ||||| |||||| ||||||||||||    
T  26709634 tttaagttattgatttaatgcacgtatttgaagttttttaagtttcaaataggt 26709581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 29172445 - 29172506
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    |||||| |||||||||| ||| |||||||||| |||| ||   |||||||||||||||||||    
T  29172445 aaggacttatttgaaacttaacaaacttaaagtactaccccggtatttttgtcaaacttaaa 29172506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 12694961 - 12695009
Alignment:
Q  88 atcatttaagtttgacaaaaatatcggagtagtcctttaagttggttaa 136  Q
    ||||||||||||||||||||||||||  || ||||||||| || |||||    
T  12694961 atcatttaagtttgacaaaaatatcgaggtcgtcctttaaatttgttaa 12695009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 51480645 - 51480729
Alignment:
Q  192 aagtttcaaatatgtt-tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaa 275  Q
    |||||||||||| ||  |||||||| ||| || |||||| ||||| ||| | |||||| |||||||||||| ||||||| |||||    
T  51480645 aagtttcaaataggtcctttaagttgttacttcaatgcacctatttgaaattttttaagtttcaaataggtccttaaaagggtaa 51480729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 358
Target Start/End: Original strand, 49559406 - 49559572
Alignment:
Q  192 aagtttcaaatatgtt-tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttga 290  Q
    |||||||||||| ||  |||||||| |||||||||||||  |||| ||||| |||||| |||||||| | | ||||||| ||||||||||||||||||||    
T  49559406 aagtttcaaataggtcctttaagtttttaatttaatgcacatatttgaagttttttaagtttcaaattgatccttaaaagggtaataaggacctatttga 49559505  T
Q  291 aacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttg 358  Q
    ||| | | |||| |||||||||| |||  || ||||||||||| ||||||||| |||| || ||||||    
T  49559506 aacttgaaaaacctaaaggactaccctggtacttttgtcaaac-taaaaggactaaaagaggtatttg 49559572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 34073058 - 34072996
Alignment:
Q  276 taaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    |||||||||||||||||| ||| |||||||||| ||||||||  |||||||||||||||||||    
T  34073058 taaggacctatttgaaacttaaaaaacttaaagcactaacctggtatttttgtcaaacttaaa 34072996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 361
Target Start/End: Original strand, 34073128 - 34073244
Alignment:
Q  243 ttttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaagga 342  Q
    |||||| |||||||||| | ||||||| |||||||||||||| |||||||  ||| |||| |||||||||||||   || ||||||| ||||| ||||||    
T  34073128 ttttaagtttcaaatagatccttaaaagggtaataaggacctctttgaaatttaaaaaacataaaggactaacccggtacttttgtctaactt-aaagga 34073226  T
Q  343 ccaaaaaagatatttggcc 361  Q
     | ||||||||||||||||    
T  34073227 -ctaaaaagatatttggcc 34073244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 55160093 - 55160032
Alignment:
Q  242 attttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaact 303  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||    
T  55160093 attttaagtttcaaataggttcttaaaaatgtaataaggacttatttgaaacttaaaaaact 55160032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 49559367 - 49559295
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaa-ggactaacctattatttttgtcaaacttaaaaggaccaaaa 348  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||   |||||||||||||||||||||||||||||    
T  49559367 aaggacctattagaaacttaaaaaacttaaaaggactaacccggtatttttgtcaaacttaaaaggaccaaaa 49559295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 31142981 - 31143064
Alignment:
Q  192 aagtttcaaatatgt-ttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaa 275  Q
    ||||||||||||||| ||||||| | ||||||| |  ||||||| |||||| |||||| |||||||||||||||||||| |||||    
T  31142981 aagtttcaaatatgtcttttaagctgttaatttcacacatctatcagaagt-ttttaagtttcaaataggttcttaaaagggtaa 31143064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 47183969 - 47183881
Alignment:
Q  193 agtttcaaatatgt-ttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataagg 280  Q
    ||||| |||||||| ||||||||| |||||||||| ||  |||| ||||| |||||| ||||||||||||| |||||| | ||||||||    
T  47183969 agttttaaatatgtcttttaagttgttaatttaatacacatatttgaagttttttaagtttcaaataggtttttaaaaggataataagg 47183881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 22415467 - 22415542
Alignment:
Q  217 ttaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaac 293  Q
    ||||||||||| ||||||| ||||| |||||  ||| |||||| | ||||||||| |||||||||| ||||||||||    
T  22415467 ttaatttaatgtatctatttgaagt-ttttatgttttaaatagatacttaaaaagataataaggacatatttgaaac 22415542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 30807418 - 30807490
Alignment:
Q  286 tttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttg 358  Q
    |||||||| ||| ||||||| || ||||| |   |||||| |||||||||||||||| |||||||||||||||    
T  30807418 tttgaaacttaaaaaacttatagaactaatccgatattttcgtcaaacttaaaaggatcaaaaaagatatttg 30807490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 36961283 - 36961346
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaag 340  Q
    |||||||||||| |||| ||| ||  |||||||||||||| | ||||||| |||||||||||||    
T  36961283 aaggacctatttaaaacttaaaaagtttaaaggactaacccaatatttttatcaaacttaaaag 36961346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 27007844 - 27007921
Alignment:
Q  192 aagtttcaaatatgtt-tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaa 269  Q
    |||||||||||| ||  |||||||| |||||||||| || ||||| ||||| |||||| |||||||||||| |||||||    
T  27007844 aagtttcaaataggtcctttaagttgttaatttaatacacctatttgaagt-ttttaagtttcaaataggtccttaaaa 27007921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 27095015 - 27094938
Alignment:
Q  284 tatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggcct 362  Q
    |||||||||| ||| ||| ||||| |||||||   |||||||||||| |||| ||||||||||||||| ||||| ||||    
T  27095015 tatttgaaacttaaaaaatttaaatgactaacacgttatttttgtcatactt-aaaggaccaaaaaaggtattttgcct 27094938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 27007862 - 27007825
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaa 314  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27007862 aaggacctatttgaaacttaaaaaacttaaaggactaa 27007825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 27007951 - 27008035
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggcct 362  Q
    |||||||| |||||||| ||| || ||||||||||||| |  ||||||||||  ||||| |||||||||||| |  ||||||||||    
T  27007951 aaggacctgtttgaaacttaaaaaccttaaaggactaagccgttatttttgttgaactt-aaaggaccaaaagatgtatttggcct 27008035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 30807470 - 30807413
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaataagt 149  Q
    |||||||||||| ||||||||||| |||| || ||||||  |||||||||||| ||||    
T  30807470 tttaagtttgacgaaaatatcggattagttctataagttttttaagtttcaaacaagt 30807413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 28880169 - 28880241
Alignment:
Q  195 tttcaaatatgtttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaa 267  Q
    |||||||| ||| |||||| | ||||||||||  ||||||| ||||| ||| || |||||||||||| |||||    
T  28880169 tttcaaatgtgtatttaagctgttaatttaatctatctatttgaagtttttaaagtttcaaataggtccttaa 28880241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 36961167 - 36961086
Alignment:
Q  255 aataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||||| |||||||  ||||| |||||||||||||||  | | ||||||  |||||||| | | |||||||||||||||||||    
T  36961167 aataggtccttaaaagtgtaatgaggacctatttgaaaatttaaaaactt--aggactaatccaatatttttgtcaaacttaaa 36961086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 363
Target Start/End: Original strand, 18880453 - 18880572
Alignment:
Q  243 ttttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaagga 342  Q
    |||||| ||| ||||| ||  |||||| || ||||||||| |||||||||| ||| ||||||||||||||||| |  |||||||||||||||| ||||||    
T  18880453 ttttaattttaaaatatgtcgttaaaaggggaataaggacatatttgaaacttaaaaaacttaaaggactaacatggtatttttgtcaaactt-aaagga 18880551  T
Q  343 ccaaaaaagatatttggccta 363  Q
      |||||| ||||||||||||    
T  18880552 ttaaaaaaaatatttggccta 18880572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 1461359 - 1461445
Alignment:
Q  254 aaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggac--taacctattatttttgtcaaacttaaa 338  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||  ||||||| ||||| | |||||||||||    
T  1461359 aaataggtccttaaaagggtaataaggacctatttgaaacataaaaaacttcaaggactataacctaatatttctatcaaacttaaa 1461445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 9002710 - 9002778
Alignment:
Q  244 tttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggact 312  Q
    ||||||||||||||| ||  ||||||||||||||| ||||||||| |||||||| ||||||||| ||||    
T  9002710 tttaaatttcaaataagtcattaaaaaggtaataaagacctatttaaaacataaaaaacttaaaagact 9002778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 38919601 - 38919650
Alignment:
Q  243 ttttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaa 292  Q
    |||||| |||||||||||||||||||| ||||||||  ||||||||||||    
T  38919601 ttttaagtttcaaataggttcttaaaatggtaataaaaacctatttgaaa 38919650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 37534017 - 37534093
Alignment:
Q  217 ttaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaac 293  Q
    ||||||||||||| ||||| ||||| ||||||  || |||||||| ||||||| ||||| || ||| ||||||||||    
T  37534017 ttaatttaatgcacctattcgaagttttttaagctttaaataggtccttaaaatggtaacaaagacttatttgaaac 37534093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 31070313 - 31070360
Alignment:
Q  281 acctatttgaaacataataaacttaaaggactaacctattatttttgt 328  Q
    ||||||||||||| ||| |||||||||||||||||||  |||||||||    
T  31070313 acctatttgaaacttaaaaaacttaaaggactaacctgatatttttgt 31070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 338
Target Start/End: Original strand, 44933541 - 44933636
Alignment:
Q  243 ttttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||| |||| ||||||||  |||||| | | ||||||||||||||||||| ||| ||| |||||||| ||| |   ||||||||||||| |||||    
T  44933541 ttttatattttaaataggtcattaaaaggatgataaggacctatttgaaacttaaaaaatttaaaggattaatccgatatttttgtcaaatttaaa 44933636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 1461215 - 1461269
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaata 146  Q
    ||||||||||||||||||||||| ||||| |||||| || ||||| ||| |||||    
T  1461215 tttaagtttgacaaaaatatcggggtagttctttaaatttgttaaattttaaata 1461269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 38223393 - 38223335
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaataagtt 150  Q
    ||||||||||||||||||| |   ||||| ||||||| | |||||||||||||||||||    
T  38223393 tttaagtttgacaaaaataccaaggtagttctttaagcttgttaagtttcaaataagtt 38223335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 44933636 - 44933582
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaata 146  Q
    ||||| |||||||||||||||||| || |||||||| ||  ||||||||||||||    
T  44933636 tttaaatttgacaaaaatatcggattaatcctttaaattttttaagtttcaaata 44933582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 31893531 - 31893611
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttg 358  Q
    ||||||||| ||||||| |   ||||||||||||||||| ||  | || ||||||||| |||||||||||||| ||||||||    
T  31893531 aaggacctaattgaaacttttaaaacttaaaggactaacttagaaattctgtcaaact-aaaaggaccaaaaatgatatttg 31893611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 340
Target Start/End: Original strand, 44996787 - 44996938
Alignment:
Q  192 aagtttcaaatatgtt-tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggaccta-tttg 289  Q
    |||||||||||||||  |||||||| ||||||||||| |  || |  |||| |||||  |||||||| ||||||||||||||||| ||||||||| |||     
T  44996787 aagtttcaaatatgtcatttaagttgttaatttaatgaacatagttaaagttttttaggtttcaaattggttcttaaaaaggtaacaaggacctatttta 44996886  T
Q  290 aaacataataaacttaaaggactaacctatta-tttttgtcaaacttaaaag 340  Q
    |||| ||  |||||| ||||||||||||| ||  ||||||||||||||||||    
T  44996887 aaacttataaaacttcaaggactaacctaatacattttgtcaaacttaaaag 44996938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 24335246 - 24335132
Alignment:
Q  192 aagtttcaaatatgtttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaa 291  Q
    ||||||| |||| | |||||||||||||||||||||||||||||  |||| | |||| ||| |||||||| |||||||  ||| ||||||| ||||||||    
T  24335246 aagtttccaatagggttttaagttattaatttaatgcatctatttaaagt-tcttaagttttaaataggtccttaaaagagtattaaggacttatttgaa 24335148  T
Q  292 acataataaacttaaa 307  Q
    || | | |||||||||    
T  24335147 actttaaaaacttaaa 24335132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 348
Target Start/End: Complemental strand, 29362241 - 29362100
Alignment:
Q  206 tttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataaggacctatttgaaacataataaactta 305  Q
    ||||||| || |||||||||||||  |||||||||| |||||| ||| ||||||   ||||||| |||||||||||| |||||||||| | | ||| |||    
T  29362241 tttttaaattgttaatttaatgcacatattagaagt-ttttaagttttaaatagacccttaaaagggtaataaggacttatttgaaactttaaaaattta 29362143  T
Q  306 aaggactaacctatta-tttttgtcaaacttaaaaggaccaaaa 348  Q
    ||  |||| || || | |||||||||||||| ||||||||||||    
T  29362142 aacaactagccaataattttttgtcaaactt-aaaggaccaaaa 29362100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 9577094 - 9577132
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagtt 130  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  9577094 tttaagtttgacaaaaatatcggattagtcctttaagtt 9577132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 9840020 - 9840074
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaata 146  Q
    ||||||||||| ||||||| |||| ||||||||||||||  ||||||||||||||    
T  9840020 tttaagtttgataaaaataccggattagtcctttaagttttttaagtttcaaata 9840074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 27111025 - 27111087
Alignment:
Q  273 taataaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaactt 335  Q
    ||||||||||| |||| |||| ||| |||||||||||| ||| ||| ||||||||||||||||    
T  27111025 taataaggaccaatttaaaacttaaaaaacttaaaggattaatctaatatttttgtcaaactt 27111087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 33364857 - 33364795
Alignment:
Q  88 atcatttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaataagtt 150  Q
    |||||||||||||||||||||||||| || | || |||||||| ||||| ||| |||||||||    
T  33364857 atcatttaagtttgacaaaaatatcgaagcaatcatttaagtttgttaatttttaaataagtt 33364795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 9840081 - 9839996
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggccta 363  Q
    |||||| |||||||||| ||| |||||||||||||||| |   ||||||| |||||||| |||||||||| |||  ||||| |||||    
T  9840081 aaggacatatttgaaacttaaaaaacttaaaggactaatccggtatttttatcaaactt-aaaggaccaacaaatgtatttagccta 9839996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 29362330 - 29362384
Alignment:
Q  284 tatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||| |||| ||| |||||| ||||||||||||| ||||||||| |||||||||    
T  29362330 tatttaaaacttaaaaaacttgaaggactaacctagtatttttgtaaaacttaaa 29362384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 2230652 - 2230713
Alignment:
Q  278 aggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaa 339  Q
    ||||| ||||| |||| | | ||| |||||||||||||||| ||||||| ||||||||||||    
T  2230652 aggacttatttaaaactttaaaaatttaaaggactaacctaatatttttatcaaacttaaaa 2230713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 17707887 - 17707830
Alignment:
Q  281 acctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||||||||||| ||| | | |||||||||||| ||  |||||||||||||||||||    
T  17707887 acctatttgaaacttaaaacatttaaaggactaatctcgtatttttgtcaaacttaaa 17707830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 24543235 - 24543198
Alignment:
Q  303 ttaaaggactaacctattatttttgtcaaacttaaaag 340  Q
    |||||||||||||| | |||||||||||||||||||||    
T  24543235 ttaaaggactaacccaatatttttgtcaaacttaaaag 24543198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 9577212 - 9577145
Alignment:
Q  210 taagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaataa 278  Q
    |||||| |||| ||||||||  |||| ||||| ||||||||||||||| ||||||||||| | ||||||    
T  9577212 taagttgttaacttaatgcacttatttgaagt-ttttaaatttcaaattggttcttaaaaggataataa 9577145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 24550975 - 24551054
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatattt 357  Q
    ||||||||||||||||| ||| |||||||||  | ||| ||  ||||||| ||||| || |||||||||||| ||||||||    
T  24550975 aaggacctatttgaaacttaaaaaacttaaacaattaatctggtatttttatcaaa-tttaaaggaccaaaagagatattt 24551054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 321921 - 321835
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggcctat 364  Q
    ||||||||||||||||  ||| ||||||||||||||||||   ||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  321921 aaggacctatttgaaatttaaaaaacttaaaggactaacccggtatttttatcaaactt-aaaggaccaaaaatgatatttcgcctat 321835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 14023397 - 14023343
Alignment:
Q  207 ttttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggt 261  Q
    |||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||    
T  14023397 ttttaagttattaatttaatgcatttatttgaagttttttaagtttcaaataggt 14023343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 34222320 - 34222382
Alignment:
Q  276 taaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    |||||||||||||||||| ||| |||||||||||||||| ||  |||  ||||||||||||||    
T  34222320 taaggacctatttgaaacttaaaaaacttaaaggactaatctcatatgcttgtcaaacttaaa 34222382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 34444922 - 34444960
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagtt 130  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34444922 tttaagtttgacaaaaatatcggattagtcctttaagtt 34444960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 34445136 - 34445197
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||  |||| ||||||||||||||    
T  34445136 aaggacctattagaaacttaaaaaacttaaaggactaatctgatattcttgtcaaacttaaa 34445197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 11494879 - 11494800
Alignment:
Q  284 tatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaaaaagatatttggcctat 364  Q
    |||||||||| ||| ||||||| | ||||||| |  |||||||||||||||| |||||| ||||| |||||||||| ||||    
T  11494879 tatttgaaacttaaaaaacttagaagactaacttgatatttttgtcaaactt-aaaggatcaaaagagatatttggtctat 11494800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 23251720 - 23251658
Alignment:
Q  284 tatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaaggaccaaa 347  Q
    |||||||||| ||| ||| |||||||||||||||   ||||||||||||||| |||||||||||    
T  23251720 tatttgaaacttaaaaaagttaaaggactaacctgaaatttttgtcaaactt-aaaggaccaaa 23251658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 7119141 - 7119183
Alignment:
Q  88 atcatttaagtttgacaaaaatatcggagtagtcctttaagtt 130  Q
    |||||||||||||||||||||||||||| || || ||||||||    
T  7119141 atcatttaagtttgacaaaaatatcggattaatcttttaagtt 7119183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 34445197 - 34445143
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaata 146  Q
    |||||||||||||| |||||| || ||||||||||||||  ||||||||| ||||    
T  34445197 tttaagtttgacaagaatatcagattagtcctttaagttttttaagtttctaata 34445143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 15408645 - 15408605
Alignment:
Q  207 ttttaagttattaatttaatgcatctattagaagtatttta 247  Q
    ||||||||| ||||||||||||||||||| ||||| |||||    
T  15408645 ttttaagttgttaatttaatgcatctatttgaagtttttta 15408605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 10673880 - 10673819
Alignment:
Q  277 aaggacctatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaa 338  Q
    ||||||||||||||||| ||| |||||||||||| | ||||| |||||||||||||||||||    
T  10673880 aaggacctatttgaaacttaaaaaacttaaaggattgacctagtatttttgtcaaacttaaa 10673819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 41695128 - 41695195
Alignment:
Q  208 tttaagttattaatttaatgcatctattagaagtattttaaatttcaaataggttcttaaaaaggtaa 275  Q
    |||||||| ||||||||||||| ||||| ||||| ||| || |||||||||||||  ||||| |||||    
T  41695128 tttaagttgttaatttaatgcacctatttgaagtttttaaagtttcaaataggttaataaaagggtaa 41695195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 16103235 - 16103289
Alignment:
Q  92 tttaagtttgacaaaaatatcggagtagtcctttaagttggttaagtttcaaata 146  Q
    |||||||||||||||| ||||||  ||||| ||||||||  ||||||||||||||    
T  16103235 tttaagtttgacaaaagtatcgggttagtcttttaagttttttaagtttcaaata 16103289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 16103289 - 16103233
Alignment:
Q  284 tatttgaaacataataaacttaaaggactaacctattatttttgtcaaacttaaaag 340  Q
    |||||||||| ||| ||||||||| ||||||||   || ||||||||||||||||||    
T  16103289 tatttgaaacttaaaaaacttaaaagactaacccgatacttttgtcaaacttaaaag 16103233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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