View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18582_low_5 (Length: 367)
Name: NF18582_low_5
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18582_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 25223586 - 25223953
Alignment:
| Q |
1 |
ttcactgataagagcaacaaacacattgaactcatatttctggagcctatgcagaatcttgacacacatcatgagtggtcatgggttgagatattgttga |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25223586 |
ttcactgataagagcaacaagcacattgaactcatatttctggagcctatgcagaatcttgacacacatcatgagtggtcatgggttgagatattgttgg |
25223685 |
T |
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| Q |
101 |
aaaagagcgaacaatagttaattgttgttgggaacattttggtcttttcagggttccagaaagaaacaataaaagcctaaagagcaattttcctaatact |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |
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| T |
25223686 |
aaaagagcgaacaacagttaattgttgttgggaacattttggtcttttcagggttccagaaaaaaacaatgaaagcctaaagagaaattttcctaatact |
25223785 |
T |
|
| Q |
201 |
ttaccgacgatattgaccttgacactatggttgtatataatttttaca-tgttcaataaaaaatacctaattaagtagttaggagaggaatttataggct |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25223786 |
ttaccgacgatattgaccttgacactatagttgtatataatttttaaattgttcaataaaaaatacataattaagtagttaggagaggaatttataggct |
25223885 |
T |
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| Q |
300 |
atgccaaatcaaactttgcatagatatgaaattttaacataattgaagacccaattgtgacattctat |
367 |
Q |
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| T |
25223886 |
atgccaagtcaaactttgcatagatatgaaattttaacataattcaagacccaattgtgacattctat |
25223953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 26171693 - 26171328
Alignment:
| Q |
8 |
ataagagcaacaaacacattgaactcatatttctggagcctatgcagaatcttgacacacatcatgagtggtcatgggttgagatattgttgaaaaagag |
107 |
Q |
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| T |
26171693 |
ataagagcaacaagcacattgacctcatatttcttgagactatgtagaatcttgacgcatttcatgagtggtcatggggtgggatatcgctgggaaagag |
26171594 |
T |
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| Q |
108 |
cgaacaatagttaattgttgttgggaacattttggtcttttcagggttccagaaagaaacaataaaagcctaaagagcaattttcctaatactttaccga |
207 |
Q |
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|||| | ||||||||| ||||| || |||||||||||||||||||||| |||||||| ||| |||| |||||||| |||||||||||||||||| ||| |
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| T |
26171593 |
cgaatgaccgttaattgtcgttggaaatattttggtcttttcagggttcctgaaagaaaaaatgaaagtctaaagagaaattttcctaatactttatcga |
26171494 |
T |
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| Q |
208 |
cgatattgaccttgacactatggttgtatataatttttacatgttcaataaaaaat-acctaattaa------gtagttaggagaggaatttataggcta |
300 |
Q |
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| T |
26171493 |
cgatatcaaccttactattatggttgtatataatatcaacttgttcaataaaaaatcacctaattaaaattaggtagttaggagaggaatttataggcta |
26171394 |
T |
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| Q |
301 |
tgccaaatcaaactttgc----atagatatgaaattttaacataattgaagacccaattgtgacat |
362 |
Q |
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| T |
26171393 |
tgccaaatcaaactttgcgtaaatagatatggtattttaaaataattcaagaccaaatcgtgacat |
26171328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 8350767 - 8350389
Alignment:
| Q |
1 |
ttcactgataagagcaacaaacacattgaactcatatttctggagcctatgcagaatcttgacacacatcatgagtggtcatgggttgagatattgttga |
100 |
Q |
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|||| ||||| ||||||||| || ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| || || ||||| |||| |
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| T |
8350767 |
ttcaatgataggagcaacaagcatgttgaactcaattttcttaagcctatgcagaatcttgacacacttcatgagtggtcataggctgggatatcgttgg |
8350668 |
T |
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| Q |
101 |
aaaagagcgaacaatagttaattgttgttgggaacattttggtcttttcagggttccagaaag----aaacaataaaagcctaaagagcaattttcctaa |
196 |
Q |
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| T |
8350667 |
gaaagagcgaacaacaattaattgtcgttggaaatattttgatctttttggggttccagaaagggaaaaaaaatgaaagcctaaagagaaattttcctaa |
8350568 |
T |
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| Q |
197 |
tactttaccgacgatattgaccttgacactatggttgtatataatttttacatgttcaataaaaaa---tacctaattaa------gtagttaggagagg |
287 |
Q |
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|||| | || |||| || |||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
8350567 |
tactctgccaacgacatcgaccttgacattatggttgtatataattttcacatgttcaataaaaaaaatcaactaattaaaattaggtagttaggagagg |
8350468 |
T |
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| Q |
288 |
aatttataggctatgccaaatcaaactttgc----atagatatgaaattttaacataattgaagacccaattgtgacat |
362 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||| |||||||| | ||||||| |
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| T |
8350467 |
aatttataggctatgccaaatcaatctttgcatcaatagatatgttattttagcataattcaagacccagtcgtgacat |
8350389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 8352282 - 8352338
Alignment:
| Q |
100 |
aaaaagagcgaacaatagttaattgttgttgggaacattttggtcttttcagggttc |
156 |
Q |
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||||||||| |||||||||||| | |||||| ||||||||||| ||||||||||| |
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| T |
8352282 |
aaaaagagcaaacaatagttaactactgttggaaacattttggtactttcagggttc |
8352338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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