View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18582_low_9 (Length: 250)
Name: NF18582_low_9
Description: NF18582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18582_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 35166066 - 35166293
Alignment:
| Q |
15 |
aatctcaaccattaaatctaattaatccaatggtttacaatattccatctgtaaaattagaaaaattcctaactaaggtatgtgacttctcttggttctt |
114 |
Q |
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| T |
35166066 |
aatctcaaccattaaatttaattaatccaatggtttacaatattccatctgtaaaattagaaaaattactaactaaggtatgtgacttctcttagttctt |
35166165 |
T |
|
| Q |
115 |
ctttctatttgtttttctcaaactgcaaagttaagtgttgtttgtgcaacgacgacgacgaaaagtgttgcaacctggttgagatcatgaccgttgttat |
214 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
35166166 |
ctttcaatatgtttttctcaaactgcaaagttaagtgttgtttgtgca---acgacgacgaaaagtgttgcaacctgtttgagatcatgaccgttgtaat |
35166262 |
T |
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| Q |
215 |
accagacaaaataccaatggtcagttgcaag |
245 |
Q |
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|||| |||||||||||||||||| ||||||| |
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| T |
35166263 |
accatacaaaataccaatggtcaattgcaag |
35166293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 44791545 - 44791318
Alignment:
| Q |
15 |
aatctcaaccattaaatctaattaatccaatggtttacaatattccatctgtaaaattagaaaaattcctaactaaggtatgtgacttctcttggttctt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
44791545 |
aatctcaaccattaaatctaattaatccaatggttta---tattccaactgtaaaattagtaaaattcctaactaaggtatgtgacttctcttagttctt |
44791449 |
T |
|
| Q |
115 |
ctttctatttgtttttctcaaactgcaaagttaagtgttgtttgtgcaacgacgacgacgaaaagtgttgcaacctggttgagatcatgaccgttgttat |
214 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
44791448 |
ctttctatttgtttttctcaaactgcaaagttaactgttgtttatgcaacgtcgacgatgaaaagtgttgcaacctggttgagatcatgaccgttgtaat |
44791349 |
T |
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| Q |
215 |
accagacaaaataccaatggtcagttgcaag |
245 |
Q |
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| T |
44791348 |
accatacaaaataccaatggtcaattgcaag |
44791318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 25758656 - 25758690
Alignment:
| Q |
15 |
aatctcaaccattaaatctaattaatccaatggtt |
49 |
Q |
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| T |
25758656 |
aatctcaaccattaaatcaaattaatccaatggtt |
25758690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 38099245 - 38099205
Alignment:
| Q |
15 |
aatctcaaccattaaatctaattaatccaatggtttacaat |
55 |
Q |
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|||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
38099245 |
aatctcaaccattatatctaattaatctaatggttcacaat |
38099205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 52696085 - 52696049
Alignment:
| Q |
15 |
aatctcaaccattaaatctaattaatccaatggttta |
51 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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|
| T |
52696085 |
aatctcaaccattaaattcaattaatccaatggttta |
52696049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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