View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_10 (Length: 418)
Name: NF18583_high_10
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Complemental strand, 10295999 - 10295587
Alignment:
| Q |
6 |
atcaccagcttacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatccacac |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10295999 |
atcaccagcttacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatccacac |
10295900 |
T |
|
| Q |
106 |
aacatatgtcagacgaatatgtaccatgattcagttcagtcctcattacaagcaacatcccactttcattgtgatacagaaccttccgtggagttccctc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10295899 |
aacatatgtcagacgaatatgtaccatgattcagttcagtcctcattacaagcaacatcccactttcattgtgatacagaaccttccgtggagttccctc |
10295800 |
T |
|
| Q |
206 |
--aatgaaacttctgcatattaagtctcttattggggaacatctccgcctaaagtatcaaatgataaatagtgtaagtcaagatagtaacaagtggcagc |
303 |
Q |
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| T |
10295799 |
taaatgaaacttctgcatattaagtctcttattggggaacatctccacctaaagtatcaaatgataaatagtgtaagtcaagatagtaacaagtagcagc |
10295700 |
T |
|
| Q |
304 |
acatacaaaaagacacacgtacaacgcgtaatcaggagtgaaaacatggctgttgtctagtgagggagaagtttcaaagagagaaaataagacagtttta |
403 |
Q |
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| T |
10295699 |
acatacaaaaagacacacgtacaacgcggaatcaggaatgaaaacatggctgttttctagtgagggaaaagtttaaaagatagaaaataaaacagtttta |
10295600 |
T |
|
| Q |
404 |
tcaacaacactat |
416 |
Q |
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| T |
10295599 |
tcaacaacactat |
10295587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 50 - 264
Target Start/End: Original strand, 43797076 - 43797292
Alignment:
| Q |
50 |
ttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatccacacaacatatgtcagacgaatatgtaccatgattcagttcagtcctc |
149 |
Q |
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||||||| |||| ||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||| || |||||||| | ||||||| |||||| |
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| T |
43797076 |
ttctccaagttctagtctaaaagacgatagtactgacccgcttaggggatccacacaacatatgtcagacaaacatgtaccaatactcagttcggtcctc |
43797175 |
T |
|
| Q |
150 |
attacaagcaacatcccactttcattgtgatacagaaccttccgtggagttccc--tcaatgaaacttctgcatattaagtctcttattggggaacatct |
247 |
Q |
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|| ||||| |||||| |||||| ||||||||||| |||||||||||||| ||| | |||||||||| ||||||||||||||| || || ||||| |
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| T |
43797176 |
atcacaagtaacatctgactttcgttgtgatacaggaccttccgtggagtgccctttaaatgaaactttctcatattaagtctcttgctgtagaccatct |
43797275 |
T |
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| Q |
248 |
ccgcctaaagtatcaaa |
264 |
Q |
| |
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|| ||||||| |||||| |
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| T |
43797276 |
ccacctaaagcatcaaa |
43797292 |
T |
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