View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_12 (Length: 372)
Name: NF18583_high_12
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 41958354 - 41958649
Alignment:
| Q |
20 |
caaaactccctaaatgttatttggttttgtgttgcttgaattattcggaaagaacgtagcaaacgtatttttcagagaaaggaggacaacttacaagatc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
41958354 |
caaaactccctaaatgttatttggttttgtgttgcttgaattattcaaaaggaacgtaacaaacgtatttttcagagaaaggaggacaacttacaggatc |
41958453 |
T |
|
| Q |
120 |
tttgt-aaaggataaagctttagtcatattggtggtttaagtcataaatgttttattccactttgactatcaaatatggaggcttaataatatgttatgt |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
41958454 |
tttgtgaaaggataaagctttagtcatattggtggtttaagtaaaaaatgttttattccactttcactatcaattatggaggcttaataatatgatatgt |
41958553 |
T |
|
| Q |
219 |
ttaactacagttatgtaacttgtttagcttgcctttcatatctttcggatatcgtgtattactttgtttcttgtcaagttctttacggtacacctc |
314 |
Q |
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||||||||||||||||| ||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
41958554 |
ttaactacagttatgtaccttgttttgcttgccctttatatctttcagatatcgtgtattactttgtttcttgttaagctctttacggtacacctc |
41958649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 37493076 - 37492956
Alignment:
| Q |
85 |
tatttttcagagaaaggaggacaacttacaagatctttgt-aaaggataaagctttagtcatattggtggtttaagtc-ataaatgttttattcca-ctt |
181 |
Q |
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|||||||||||| |||||||| |||||||| | ||||||| ||||| |||| ||| |||||||||||||||||||||| | | ||||||||||| | ||| |
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| T |
37493076 |
tatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaacttcagtcatattggtggtttaagtcgaaatatgttttattcgatctt |
37492977 |
T |
|
| Q |
182 |
tgactatcaaatatggaggct |
202 |
Q |
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|||||||||| |||||||||| |
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| T |
37492976 |
tgactatcaattatggaggct |
37492956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 38037438 - 38037578
Alignment:
| Q |
22 |
aaactccctaaatgttatttggttttgtgttgcttgaattattcggaaagaacgtagcaaacgtatttttcagagaaaggaggacaacttacaagatctt |
121 |
Q |
| |
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|||||||||||||||||||||| ||| ||||| ||| | |||| | ||||| |||| || ||||||||||| ||||||||| ||||| || | || |
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| T |
38037438 |
aaactccctaaatgttatttggctttctgttgtttggactatttgaaaagagcgtaacagttgtatttttcagcaaaaggaggaaaacttgcaggtccta |
38037537 |
T |
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| Q |
122 |
tgt-aaaggataaagctttagtcatattggtggtttaagtc |
161 |
Q |
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||| ||| | | |||||| |||||||||| ||||||||||| |
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| T |
38037538 |
tgtgaaaaggtgaagcttcagtcatattgatggtttaagtc |
38037578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 7129338 - 7129182
Alignment:
| Q |
145 |
tattggtggtttaagtcataa-atgttttattccactttgactatcaaatatggaggcttaata----atatgttatgtttaactacagttatgtaactt |
239 |
Q |
| |
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||||||||||||||||| || ||||||||||| ||||||| || ||| | |||||||||||| ||||||| |||||||||||| ||||||| ||| |
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| T |
7129338 |
tattggtggtttaagtcgaaatatgttttattcgactttgattaccaattctggaggcttaatcctatatatgttttgtttaactacaattatgtagctt |
7129239 |
T |
|
| Q |
240 |
gtttagcttgcctttcatatctttcggatatcgtgtattactttgtttcttgtcaag |
296 |
Q |
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|||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
7129238 |
gtttagcttgcctttcatatatttcagatattgtgtattactttgtttcttgtcaag |
7129182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 6821009 - 6821221
Alignment:
| Q |
22 |
aaactccctaaatgttatttggttttgtgttgcttgaattattcggaaagaacgtagcaaacgtatttttcagagaaaggaggacaacttacaagatctt |
121 |
Q |
| |
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|||||||||||| |||| || ||| |||||||||||||||| |||| |||| || ||||| ||||||| |||| ||||||||||||||||| | |||| |
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| T |
6821009 |
aaactccctaaacattatatgactttttgttgcttgaattatttggaaggaacataacaaacatattttttagaggaaggaggacaacttacatgctctt |
6821108 |
T |
|
| Q |
122 |
tgt-aaaggataaagctttagtcatattggtggtttaag-tcataaatgttttattccactttgactatcaaatatggaggcttaataatatgttatgtt |
219 |
Q |
| |
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||| ||| | | || ||| |||| ||||||||||| ||| | | | ||||||||||| ||||||||| |||| ||||||||| ||| ||| || |||| |
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| T |
6821109 |
tgtgaaaaggtgaaacttcagtcgtattggtggttcaagttgaaatatgttttattcgactttgactgtcaatcatggaggctaaatcctattttctgtt |
6821208 |
T |
|
| Q |
220 |
taactacagttat |
232 |
Q |
| |
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|||||||| |||| |
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| T |
6821209 |
taactacaattat |
6821221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 26133521 - 26133697
Alignment:
| Q |
28 |
cctaaatgttatttggttttgtgttgcttgaattattcggaaagaacgtagcaaacgtatttttcagagaaaggaggacaacttacaagatctttg-taa |
126 |
Q |
| |
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||||||| |||||||| | | ||||||||| |||||| |||| ||||||| ||||||||||||||| || |||||||| || ||||| | |||||| || |
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| T |
26133521 |
cctaaatattatttggctgtctgttgcttggattatttggaaggaacgtaacaaacgtatttttcaaaggaaggaggataatttacaggctctttgcaaa |
26133620 |
T |
|
| Q |
127 |
aggataaagctttagtcatattggtggtttaagtc-ataaatgttttattccactttgactatcaaatatggaggct |
202 |
Q |
| |
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||| |||||||| |||| ||||||||||||||||| | | ||||||||||| |||||||||||||| | |||||||| |
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| T |
26133621 |
agggtaaagcttcagtcgtattggtggtttaagtcgaaatatgttttattcgactttgactatcaactgtggaggct |
26133697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 36268404 - 36268344
Alignment:
| Q |
147 |
ttggtggtttaagtcataa-atgttttattccactttgactatcaaatatggaggcttaat |
206 |
Q |
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|||||||||||||||| || ||||||||||| ||||||| || ||| |||| ||||||||| |
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|
| T |
36268404 |
ttggtggtttaagtcaaaatatgttttattcgactttgattaccaactatgaaggcttaat |
36268344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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