View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_16 (Length: 364)
Name: NF18583_high_16
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36465330 - 36465012
Alignment:
| Q |
1 |
ttacataaaacttgctgcaaatacaaatatatacataagccaattaaagaactaattagcctggttttacatatacacaaagacatatatgaaatatatt |
100 |
Q |
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| T |
36465330 |
ttacataaaacttgctgcatatacaaatatatacataagccaattaaagaactaattagcatggttttacatatacacaaagacatatatgaaatatatt |
36465231 |
T |
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| Q |
101 |
tttagaactgaaaatgaaaagcattgataaaacctcaaaacttgaggcaaataaattaaactcttcggataaaacctttaatttcaaaggttcatgccac |
200 |
Q |
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| T |
36465230 |
tttagaactgaaaatgaaaagcattgataaaacctc-aaacttgaggcaaataaattaaactctttggataaaacctttaatttcaaaggttcatgccac |
36465132 |
T |
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| Q |
201 |
aattggttttgcacagcaagttgaaagcatgccaaatgaatgataataaatagacaacatacaaaacacattagcatcagaacaatcaagaatatggcat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36465131 |
aattggttttgcacagcaagttgaaagcatgcaaaatgaatg---ataaatagacaacatacaaaacacattagcatcagaacaatcaagaatatggcat |
36465035 |
T |
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| Q |
301 |
gaagaacaaaatgagaaaggtgg |
323 |
Q |
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|||||||||||||||||| |||| |
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| T |
36465034 |
gaagaacaaaatgagaaatgtgg |
36465012 |
T |
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