View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_17 (Length: 358)
Name: NF18583_high_17
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 10128809 - 10128485
Alignment:
| Q |
16 |
atggagtattgctcttagtatacgactacatgcctaacggaagcttagacaaccacatattttgcgaggaaggaacaagcacaaccccactaagttggaa |
115 |
Q |
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| T |
10128809 |
atggagtattgctcttagtatacgactacatgcctaacggaagcttagacaaccacatattttgcgaggaaggaacaagcacaaccccactaagttggaa |
10128710 |
T |
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| Q |
116 |
tctaagatacaaaatcctctcaggagtggcttctgcattgaattacctacacaacgagtacgatcaaactgtagtccacagagacctgaaagcaagcaac |
215 |
Q |
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| T |
10128709 |
tctaaggtataaaatcctctcaggagtcgcttctgcattgaattacctacacaacgagtacgatcaaactgtagtccacagagacctgaaagcaagcaac |
10128610 |
T |
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| Q |
216 |
ataatgctagacgttgatttcaatgcacgtttaggtgatttcggcttagcacgtgcactagagaatgaaaaaacatcgtatgcagaattagaaggagtac |
315 |
Q |
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| T |
10128609 |
ataatgctagacgttgatttcaatgcacgtttaggtgatttcggcttagcacgtgcactagagaatgaaaaaacatcgtatgcagaattagaaggagtac |
10128510 |
T |
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| Q |
316 |
aaggtacaatgggatacatagcacc |
340 |
Q |
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| T |
10128509 |
aaggtacaatgggatacatagcacc |
10128485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 315
Target Start/End: Original strand, 50886591 - 50886718
Alignment:
| Q |
187 |
tagtccacagagacctgaaagcaagcaacataatgctagacgttgatttcaatgcacgtttaggtgatttcggcttagcacgtgcactagagaatgaaaa |
286 |
Q |
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| T |
50886591 |
tagttcacagagacttgaaagcaagcaaaataatgttggaccccgatttcaatgcatgttt-ggtgattttaggttagtgcgtacattagagaaggaaaa |
50886689 |
T |
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| Q |
287 |
aacatcgtatgcagaattagaaggagtac |
315 |
Q |
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| T |
50886690 |
agcaacatatgcagaagtagaaggtgtac |
50886718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 5031269 - 5031368
Alignment:
| Q |
198 |
gacctgaaagcaagcaacataatgctagacgttgatttcaatgcacgtttaggtgatttcggcttagcacgtgcactagagaatgaaaaaacatcgtatg |
297 |
Q |
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||||| ||||||||||| |||||||| ||| ||| |||||| ||||||||||||| || | |||| |||| ||||||||||||||||||| |||| |
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| T |
5031269 |
gaccttaaagcaagcaatataatgcttgacaagaattataatgcaagtttaggtgatttgggatcagcatatgcagtagagaatgaaaaaacatcctatg |
5031368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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