View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_18 (Length: 353)
Name: NF18583_high_18
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 4264431 - 4264094
Alignment:
| Q |
1 |
tcatcattctcatttgtctcatacaaggggttatcatagcacgtcactaacacaaaaagaatcagacaaaacaaatcacatgaaattaattaagattaga |
100 |
Q |
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| T |
4264431 |
tcatcattctcatttgtctcatacaaggggtcatcatagcacgtcacttacacaaaaagaatcagacaaaacaaatcacatgaaattaattaagattaga |
4264332 |
T |
|
| Q |
101 |
gcagttggttaattaacacattatttttgtggtgtagcacaatttgatattgatatgatttagaaatgatggtggtggtggctaatacaagagtcaagaa |
200 |
Q |
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| T |
4264331 |
gcagttggttaattaacacattatttttgtggtgtagcacaatttgatattgatatgatttagaaatgatggtggtggtggctaatacaagagtcaagaa |
4264232 |
T |
|
| Q |
201 |
acnnnnnnnnnnnnnnnnngtgttaaattagttgtacacgtttacttgaaacaataatggatcttgttacttttagtactagctagtcnnnnnnnatgta |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4264231 |
actttttcttttttattttgtgttaaattagttgtacacgtttacttgaaacaataatggatcttgttacttttagtactagctagtctttttttatgta |
4264132 |
T |
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| Q |
301 |
ttgattgttgttggttttcattattttatggtacattt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4264131 |
ttgattgttgttggttttcattattttatggtacattt |
4264094 |
T |
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